Wall clock time and date at job start Sun Mar 29 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99713 * 2 1 4 4 H 1.48511 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47377 * 299.99929 * 3 2 1 6 6 H 1.48496 * 109.47173 * 60.00249 * 3 2 1 7 7 C 1.37874 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00079 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.67490 * 61.78496 * 9 7 2 11 11 C 1.54892 * 110.75961 * 298.55137 * 9 7 2 12 12 C 1.54266 * 104.19621 * 203.55910 * 11 9 7 13 13 C 1.53878 * 106.60063 * 23.60707 * 12 11 9 14 14 H 1.08997 * 110.03491 * 240.66544 * 13 12 11 15 15 N 1.46503 * 110.03259 * 119.28463 * 13 12 11 16 16 C 1.34766 * 124.17688 * 121.47079 * 15 13 12 17 17 O 1.21230 * 127.15718 * 0.02562 * 16 15 13 18 18 C 1.51588 * 105.68123 * 179.97438 * 16 15 13 19 19 N 1.47312 * 103.59518 * 0.02562 * 18 16 15 20 20 C 1.33794 * 124.17510 * 301.43281 * 15 13 12 21 21 O 1.21533 * 123.77500 * 359.76756 * 20 15 13 22 22 C 1.54266 * 106.59560 * 0.02562 * 13 12 11 23 23 H 0.97006 * 120.00221 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.48703 * 84.88095 * 11 9 7 25 25 H 1.08999 * 110.48389 * 322.23460 * 11 9 7 26 26 H 1.08998 * 110.03425 * 264.32538 * 12 11 9 27 27 H 1.09007 * 110.03395 * 142.89184 * 12 11 9 28 28 H 1.09006 * 110.59386 * 118.53114 * 18 16 15 29 29 H 1.09003 * 110.59960 * 241.46929 * 18 16 15 30 30 H 0.96993 * 126.68815 * 180.02562 * 19 18 16 31 31 H 1.08993 * 110.48974 * 95.06968 * 22 13 12 32 32 H 1.09008 * 110.48180 * 217.70923 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3775 -2.6287 1.2720 12 6 0.1789 -4.1491 1.4414 13 6 1.3520 -4.8294 0.7141 14 1 0.9762 -5.4656 -0.0872 15 7 2.1355 -5.6263 1.6614 16 6 2.3496 -6.9513 1.5404 17 8 1.9460 -7.6809 0.6604 18 6 3.2013 -7.3392 2.7330 19 7 3.3848 -6.0686 3.4554 20 6 2.7274 -5.1283 2.7531 21 8 2.6801 -3.9565 3.0722 22 6 2.2228 -3.6985 0.1287 23 1 -0.4851 0.8401 0.0004 24 1 -0.5822 -2.1324 1.1281 25 1 0.8972 -2.2134 2.1354 26 1 -0.7662 -4.4546 0.9924 27 1 0.1926 -4.4119 2.4992 28 1 2.6786 -8.0634 3.3580 29 1 4.1619 -7.7367 2.4052 30 1 3.8834 -5.9358 4.2767 31 1 3.0405 -3.4563 0.8075 32 1 2.6097 -3.9827 -0.8500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927722074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:19 Heat of formation + Delta-G solvation = -48.092028 kcal Electronic energy + Delta-G solvation = -17465.038843 eV Core-core repulsion = 14619.210542 eV Total energy + Delta-G solvation = -2845.828301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.16232 -38.37622 -37.23065 -35.81588 -33.72643 -31.94594 -28.25089 -27.84752 -27.04082 -24.10858 -22.75756 -21.34298 -19.27791 -18.99286 -17.90348 -16.81273 -16.38586 -16.13342 -15.20644 -14.97144 -14.56876 -14.19226 -14.02568 -13.88837 -13.49468 -12.80997 -12.28978 -11.89131 -11.24500 -11.19687 -10.94239 -10.61378 -10.47705 -10.17946 -10.00494 -9.75376 -9.53642 -9.44730 -9.34577 -8.95004 -8.68989 -8.28338 -5.92203 -3.93553 1.74952 2.44113 3.23628 3.27544 3.36247 3.43807 3.48568 4.08297 4.52284 4.82381 4.89206 5.24912 5.39887 5.54665 5.59795 5.73694 5.79490 6.31832 6.50838 6.57170 6.70203 6.79513 6.85972 7.01012 7.31182 7.37473 7.45652 7.53649 7.80617 8.00337 8.11792 8.38469 8.54477 9.07152 9.69457 11.17458 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.006877 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.505805 B = 4070.706387 C = 4321.929935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.055 3.945 10 H 0.030 0.970 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.140 3.860 14 H 0.098 0.902 15 N -0.565 5.565 16 C 0.516 3.484 17 O -0.482 6.482 18 C 0.063 3.937 19 N -0.739 5.739 20 C 0.692 3.308 21 O -0.511 6.511 22 C -0.124 4.124 23 H 0.258 0.742 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.437 0.563 31 H 0.071 0.929 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -14.353 6.391 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.037 3.963 10 H 0.048 0.952 11 C -0.132 4.132 12 C -0.169 4.169 13 C 0.040 3.960 14 H 0.116 0.884 15 N -0.310 5.310 16 C 0.303 3.697 17 O -0.354 6.354 18 C -0.065 4.065 19 N -0.406 5.406 20 C 0.393 3.607 21 O -0.381 6.381 22 C -0.162 4.162 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.281 0.719 31 H 0.090 0.910 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.499 -13.914 5.987 15.801 hybrid contribution 0.693 0.808 0.461 1.160 sum 5.193 -13.106 6.448 15.502 Atomic orbital electron populations 1.69966 1.05826 1.26186 1.51076 1.24947 0.94835 0.98937 0.95221 0.86578 0.80200 0.84048 0.77420 1.19869 1.21161 1.21107 1.21091 0.92787 0.90345 1.50101 0.92715 1.19522 0.91859 0.91014 0.93941 0.95162 1.22251 1.01406 0.89351 1.00169 1.22573 0.95498 1.00165 0.98660 1.22344 0.92021 0.92486 0.89162 0.88433 1.46788 1.48841 1.10456 1.24957 1.20905 0.79852 0.82310 0.86649 1.90784 1.51572 1.56398 1.36644 1.22392 1.02066 0.88923 0.93109 1.45497 1.57861 1.07995 1.29256 1.15978 0.79053 0.85470 0.80237 1.91119 1.62591 1.13799 1.70617 1.22859 0.99498 0.95160 0.98731 0.93239 0.91347 0.92394 0.92207 0.92912 0.86543 0.86492 0.71936 0.91039 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 12.02 55.43 0.67 -25.47 16 2 C 0.06 1.76 5.33 -17.82 -0.10 1.67 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.50 -14.35 8.55 -34.44 -0.29 -14.65 16 8 H 0.05 1.56 7.78 -52.49 -0.41 1.15 16 9 C 0.06 1.41 2.81 -89.77 -0.25 1.16 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.09 -2.28 5.52 -25.07 -0.14 -2.42 16 12 C -0.13 -2.59 5.93 -25.61 -0.15 -2.74 16 13 C 0.14 2.63 3.44 -66.81 -0.23 2.40 16 14 H 0.10 1.73 7.67 -51.93 -0.40 1.34 16 15 N -0.56 -9.14 2.51 -112.39 -0.28 -9.42 16 16 C 0.52 6.99 8.32 -10.55 -0.09 6.90 16 17 O -0.48 -7.73 17.53 5.60 0.10 -7.63 16 18 C 0.06 0.52 7.97 -4.31 -0.03 0.48 16 19 N -0.74 -7.61 6.58 -65.73 -0.43 -8.04 16 20 C 0.69 11.14 7.47 -88.02 -0.66 10.49 16 21 O -0.51 -10.57 15.45 5.34 0.08 -10.49 16 22 C -0.12 -2.69 5.68 -25.06 -0.14 -2.83 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.07 1.78 7.37 -51.93 -0.38 1.40 16 25 H 0.06 1.54 7.80 -51.93 -0.41 1.14 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.02 7.25 -51.93 -0.38 0.65 16 28 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.44 3.28 8.96 -40.82 -0.37 2.92 16 31 H 0.07 1.65 6.40 -51.93 -0.33 1.32 16 32 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -33.34 268.24 -6.85 -40.18 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.92 Total: -0.62 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.08 Total: 0.45 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.05 Total: -42.93 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.34 -6.85 -40.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.908 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds