Wall clock time and date at job start Sun Mar 29 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99713 * 2 1 4 4 H 1.48511 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47377 * 299.99929 * 3 2 1 6 6 H 1.48496 * 109.47173 * 60.00249 * 3 2 1 7 7 C 1.37874 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00079 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.67490 * 61.78496 * 9 7 2 11 11 C 1.54892 * 110.75961 * 298.55137 * 9 7 2 12 12 C 1.54266 * 104.19621 * 203.55910 * 11 9 7 13 13 C 1.53878 * 106.60063 * 23.60707 * 12 11 9 14 14 H 1.08997 * 110.03491 * 240.66544 * 13 12 11 15 15 N 1.46503 * 110.03259 * 119.28463 * 13 12 11 16 16 C 1.34766 * 124.17688 * 121.47079 * 15 13 12 17 17 O 1.21230 * 127.15718 * 0.02562 * 16 15 13 18 18 C 1.51588 * 105.68123 * 179.97438 * 16 15 13 19 19 N 1.47312 * 103.59518 * 0.02562 * 18 16 15 20 20 C 1.33794 * 124.17510 * 301.43281 * 15 13 12 21 21 O 1.21533 * 123.77500 * 359.76756 * 20 15 13 22 22 C 1.54266 * 106.59560 * 0.02562 * 13 12 11 23 23 H 0.97006 * 120.00221 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.48703 * 84.88095 * 11 9 7 25 25 H 1.08999 * 110.48389 * 322.23460 * 11 9 7 26 26 H 1.08998 * 110.03425 * 264.32538 * 12 11 9 27 27 H 1.09007 * 110.03395 * 142.89184 * 12 11 9 28 28 H 1.09006 * 110.59386 * 118.53114 * 18 16 15 29 29 H 1.09003 * 110.59960 * 241.46929 * 18 16 15 30 30 H 0.96993 * 126.68815 * 180.02562 * 19 18 16 31 31 H 1.08993 * 110.48974 * 95.06968 * 22 13 12 32 32 H 1.09008 * 110.48180 * 217.70923 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3775 -2.6287 1.2720 12 6 0.1789 -4.1491 1.4414 13 6 1.3520 -4.8294 0.7141 14 1 0.9762 -5.4656 -0.0872 15 7 2.1355 -5.6263 1.6614 16 6 2.3496 -6.9513 1.5404 17 8 1.9460 -7.6809 0.6604 18 6 3.2013 -7.3392 2.7330 19 7 3.3848 -6.0686 3.4554 20 6 2.7274 -5.1283 2.7531 21 8 2.6801 -3.9565 3.0722 22 6 2.2228 -3.6985 0.1287 23 1 -0.4851 0.8401 0.0004 24 1 -0.5822 -2.1324 1.1281 25 1 0.8972 -2.2134 2.1354 26 1 -0.7662 -4.4546 0.9924 27 1 0.1926 -4.4119 2.4992 28 1 2.6786 -8.0634 3.3580 29 1 4.1619 -7.7367 2.4052 30 1 3.8834 -5.9358 4.2767 31 1 3.0405 -3.4563 0.8075 32 1 2.6097 -3.9827 -0.8500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927722074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:19 Heat of formation + Delta-G solvation = -72.961939 kcal Electronic energy + Delta-G solvation = -17466.117284 eV Core-core repulsion = 14619.210542 eV Total energy + Delta-G solvation = -2846.906741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.31202 -39.57335 -38.86929 -37.05111 -35.29890 -33.79397 -30.10402 -29.22859 -28.30855 -26.09895 -23.97062 -22.62661 -21.24843 -20.42717 -19.07336 -18.32625 -17.88935 -17.34033 -16.63623 -16.45229 -16.20823 -15.90943 -15.24263 -15.03168 -14.70146 -14.32451 -13.99018 -13.75527 -13.12914 -12.90132 -12.76732 -12.45650 -12.33357 -11.89651 -11.48542 -11.42951 -11.30952 -11.09881 -10.80485 -10.60814 -10.46629 -10.28463 -8.11556 -6.20177 0.70183 1.29790 1.38269 1.39904 1.51618 2.06461 2.39409 2.43977 3.13908 3.18826 3.70710 3.88094 4.03686 4.25381 4.33876 4.38021 4.61939 4.68123 4.82280 4.83350 5.00212 5.08898 5.09472 5.36065 5.51355 5.64799 5.89702 5.95129 6.01906 6.23703 6.39209 6.47112 6.87071 7.26186 7.45893 8.97439 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.006877 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.505805 B = 4070.706387 C = 4321.929935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.045 0.955 9 C 0.045 3.955 10 H 0.010 0.990 11 C -0.081 4.081 12 C -0.119 4.119 13 C 0.150 3.850 14 H 0.112 0.888 15 N -0.575 5.575 16 C 0.511 3.489 17 O -0.509 6.509 18 C 0.079 3.921 19 N -0.713 5.713 20 C 0.685 3.315 21 O -0.570 6.570 22 C -0.113 4.113 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.452 0.548 31 H 0.054 0.946 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -16.427 7.192 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.064 0.936 9 C 0.027 3.973 10 H 0.029 0.971 11 C -0.120 4.120 12 C -0.157 4.157 13 C 0.048 3.952 14 H 0.130 0.870 15 N -0.321 5.321 16 C 0.301 3.699 17 O -0.382 6.382 18 C -0.047 4.047 19 N -0.380 5.380 20 C 0.385 3.615 21 O -0.444 6.444 22 C -0.151 4.151 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.299 0.701 31 H 0.072 0.928 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.736 -16.058 6.817 18.364 hybrid contribution 0.332 1.392 0.207 1.446 sum 6.068 -14.666 7.024 17.357 Atomic orbital electron populations 1.70079 1.07047 1.27076 1.51551 1.25723 0.95749 1.02297 0.94861 0.85591 0.78996 0.79890 0.77710 1.19469 1.20070 1.20740 1.21424 0.92650 0.92153 1.50362 0.93625 1.19494 0.92612 0.91821 0.93400 0.97148 1.21944 0.99232 0.92525 0.98275 1.22419 0.97138 0.96684 0.99468 1.21956 0.91132 0.92163 0.89980 0.87016 1.46744 1.48972 1.11605 1.24741 1.21771 0.79648 0.80807 0.87695 1.90780 1.52715 1.56528 1.38152 1.22705 1.03231 0.88003 0.90737 1.45393 1.55976 1.07603 1.29003 1.16206 0.79343 0.85439 0.80477 1.91092 1.64869 1.16470 1.72015 1.22623 0.98487 0.94839 0.99145 0.93064 0.93851 0.95577 0.90330 0.92389 0.82192 0.82423 0.70053 0.92756 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.36 12.02 21.45 0.26 -55.10 16 2 C 0.01 0.71 5.33 84.65 0.45 1.17 16 3 Si 0.95 45.99 29.54 68.60 2.03 48.02 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.53 -31.05 8.55 25.60 0.22 -30.84 16 8 H 0.05 2.69 7.78 -2.91 -0.02 2.67 16 9 C 0.05 2.41 2.81 -10.24 -0.03 2.38 16 10 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 11 C -0.08 -4.14 5.52 31.67 0.17 -3.96 16 12 C -0.12 -4.73 5.93 31.32 0.19 -4.55 16 13 C 0.15 5.53 3.44 45.72 0.16 5.68 16 14 H 0.11 3.82 7.67 -2.39 -0.02 3.81 16 15 N -0.58 -17.65 2.51 -746.75 -1.88 -19.52 16 16 C 0.51 12.20 8.32 87.94 0.73 12.93 16 17 O -0.51 -14.91 17.53 -2.87 -0.05 -14.96 16 18 C 0.08 0.88 7.97 85.76 0.68 1.56 16 19 N -0.71 -12.11 6.58 -480.29 -3.16 -15.28 16 20 C 0.69 21.08 7.47 179.44 1.34 22.42 16 21 O -0.57 -23.87 15.45 -3.82 -0.06 -23.93 16 22 C -0.11 -4.96 5.68 31.68 0.18 -4.78 16 23 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 24 H 0.04 2.36 7.37 -2.39 -0.02 2.34 16 25 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 26 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.06 2.24 7.25 -2.38 -0.02 2.22 16 28 H 0.16 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.45 5.11 8.96 -92.71 -0.83 4.28 16 31 H 0.05 2.57 6.40 -2.39 -0.02 2.56 16 32 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -76.49 268.24 1.54 -74.95 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 0.31 Total: 3.81 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 4.09 Total: 2.03 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.78 Total: -89.90 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.11 Total: -38.90 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.49 1.54 -74.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.988 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds