Wall clock time and date at job start Sun Mar 29 2020 22:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 112.99836 * 2 1 4 4 C 1.50698 * 109.47350 * 65.37065 * 3 2 1 5 5 O 1.21297 * 120.00007 * 5.36422 * 4 3 2 6 6 N 1.34783 * 120.00409 * 185.36905 * 4 3 2 7 7 C 1.37094 * 120.00008 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00438 * 21.19065 * 7 6 4 9 9 C 1.38956 * 119.99756 * 201.19756 * 7 6 4 10 10 N 1.31416 * 119.99719 * 11.59994 * 9 7 6 11 11 Si 1.86800 * 119.99909 * 191.60459 * 9 7 6 12 12 H 1.48500 * 109.47213 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47080 * 119.99564 * 11 9 7 14 14 H 1.48494 * 109.47015 * 239.99671 * 11 9 7 15 15 C 1.46499 * 119.99634 * 0.02562 * 6 4 3 16 16 C 1.47201 * 109.47521 * 83.89080 * 15 6 4 17 17 N 5.21684 * 84.90617 * 345.37102 * 2 1 3 18 18 C 1.54034 * 113.81341 * 228.01521 * 2 1 3 19 19 O 1.44175 * 85.51657 * 268.35243 * 18 2 1 20 20 C 1.44178 * 93.34208 * 335.80744 * 19 18 2 21 21 H 1.09007 * 109.47203 * 291.96201 * 1 2 3 22 22 H 1.08998 * 109.47545 * 51.96121 * 1 2 3 23 23 H 1.09001 * 109.47143 * 171.96618 * 1 2 3 24 24 H 1.08999 * 109.47158 * 185.36510 * 3 2 1 25 25 H 1.08996 * 109.47359 * 305.36538 * 3 2 1 26 26 H 0.97004 * 119.99480 * 180.02562 * 10 9 7 27 27 H 1.08996 * 109.47071 * 203.89534 * 15 6 4 28 28 H 1.09001 * 109.47093 * 323.89231 * 15 6 4 29 29 H 1.08997 * 113.86841 * 22.49956 * 18 2 1 30 30 H 1.08997 * 113.86586 * 154.20349 * 18 2 1 31 31 H 1.08996 * 113.86562 * 270.04435 * 20 19 18 32 32 H 1.09002 * 113.98168 * 138.35511 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 6 1.7790 2.1021 1.2915 5 8 1.2018 1.4956 2.1692 6 7 2.1083 3.3967 1.4715 7 6 1.7905 4.0279 2.6462 8 1 1.5999 3.4475 3.5368 9 6 1.7136 5.4146 2.6910 10 7 1.7179 6.1093 1.5755 11 14 1.6041 6.2912 4.3369 12 1 1.6167 5.2895 5.4331 13 1 2.7639 7.2061 4.4886 14 1 0.3442 7.0748 4.3975 15 6 2.8048 4.1294 0.4112 16 6 1.8231 4.6366 -0.5613 17 7 1.0668 5.0278 -1.3124 18 6 2.1519 -0.9427 -1.0475 19 8 2.1442 -1.9305 0.0026 20 6 2.1520 -0.9397 1.0501 21 1 -0.3634 0.3844 0.9531 22 1 -0.3634 0.6332 -0.8093 23 1 -0.3633 -1.0176 -0.1436 24 1 3.2116 1.3430 -0.0961 25 1 1.7222 1.9752 -0.8380 26 1 1.6645 7.0773 1.6068 27 1 3.3509 4.9663 0.8464 28 1 3.5040 3.4621 -0.0927 29 1 1.4875 -1.1778 -1.8790 30 1 3.1510 -0.6477 -1.3682 31 1 3.1511 -0.6439 1.3699 32 1 1.4884 -1.1708 1.8834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:27 Heat of formation + Delta-G solvation = -11.636727 kcal Electronic energy + Delta-G solvation = -17345.189055 eV Core-core repulsion = 14500.941575 eV Total energy + Delta-G solvation = -2844.247480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55287 -38.59494 -35.83086 -34.40641 -32.68033 -31.79953 -28.01495 -27.33450 -26.29272 -25.67987 -24.24473 -19.72692 -18.35113 -17.87161 -16.67468 -16.32085 -15.75048 -15.47831 -15.15868 -14.55660 -14.15023 -13.87836 -13.30216 -13.01813 -12.75129 -12.25013 -12.08279 -11.93540 -11.68111 -11.52962 -11.25619 -11.21457 -10.99226 -10.58437 -10.45662 -10.37896 -10.32368 -10.07046 -9.39031 -9.28518 -8.55847 -8.05551 -6.50196 -4.07629 3.07015 3.19820 3.25170 3.53329 3.76755 3.95900 3.99073 4.08539 4.40493 4.88169 4.89516 5.07251 5.20058 5.29655 5.40252 5.53615 5.65388 5.81433 5.87931 5.99492 6.10145 6.16041 6.22864 6.31799 6.40522 6.45033 6.57641 6.71812 7.42930 7.88981 8.25527 8.73033 8.97654 9.16428 9.70487 10.54823 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.007697 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.393325 B = 3636.694306 C = 4166.193811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.133 4.133 4 C 0.461 3.539 5 O -0.567 6.567 6 N -0.447 5.447 7 C -0.306 4.306 8 H 0.107 0.893 9 C 0.029 3.971 10 N -0.888 5.888 11 Si 0.932 3.068 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.283 1.283 15 C 0.222 3.778 16 C 0.250 3.750 17 N -0.478 5.478 18 C 0.038 3.962 19 O -0.390 6.390 20 C 0.058 3.942 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -6.716 -3.281 8.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 C -0.173 4.173 4 C 0.250 3.750 5 O -0.450 6.450 6 N -0.168 5.168 7 C -0.433 4.433 8 H 0.125 0.875 9 C -0.173 4.173 10 N -0.529 5.529 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.094 3.906 16 C -0.068 4.068 17 N -0.159 5.159 18 C -0.039 4.039 19 O -0.309 6.309 20 C -0.018 4.018 21 H 0.100 0.900 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.515 -6.520 -3.958 8.398 hybrid contribution 0.210 0.977 0.916 1.355 sum 3.725 -5.543 -3.043 7.339 Atomic orbital electron populations 1.21581 0.92047 1.01256 1.03629 1.23266 0.97779 0.93969 0.95216 1.21748 1.01435 0.95883 0.98282 1.20071 0.82845 0.83255 0.88854 1.90517 1.44349 1.65293 1.44816 1.43637 1.50676 1.08348 1.14138 1.19777 1.46040 0.89596 0.87899 0.87521 1.25329 0.96383 0.96785 0.98850 1.69741 1.49296 1.07875 1.25939 0.85764 0.77834 0.79129 0.81433 1.19185 1.20531 1.20870 1.18776 0.89246 0.97647 0.84920 1.29300 0.94317 0.91697 0.91525 1.80874 1.09446 1.10808 1.14726 1.24111 1.00082 0.87266 0.92441 1.89599 1.95745 1.28188 1.17369 1.23958 1.00273 0.85424 0.92187 0.90017 0.92834 0.92644 0.89725 0.90026 0.91676 0.84966 0.90328 0.89566 0.90421 0.90553 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.80 37.16 0.33 -1.73 16 2 C -0.10 -1.57 0.78 -153.43 -0.12 -1.69 16 3 C -0.13 -2.15 3.72 -27.89 -0.10 -2.25 16 4 C 0.46 9.74 7.22 -10.98 -0.08 9.66 16 5 O -0.57 -13.53 13.37 5.54 0.07 -13.45 16 6 N -0.45 -9.99 2.60 -117.93 -0.31 -10.30 16 7 C -0.31 -7.62 9.32 -14.93 -0.14 -7.76 16 8 H 0.11 2.80 7.38 -52.49 -0.39 2.41 16 9 C 0.03 0.70 5.09 -17.46 -0.09 0.61 16 10 N -0.89 -21.93 9.07 55.50 0.50 -21.43 16 11 Si 0.93 19.51 29.57 -169.99 -5.03 14.49 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.22 4.24 4.89 -6.83 -0.03 4.21 16 16 C 0.25 5.38 12.72 -20.78 -0.26 5.11 16 17 N -0.48 -11.15 18.53 42.13 0.78 -10.37 16 18 C 0.04 0.50 8.34 37.61 0.31 0.81 16 19 O -0.39 -6.15 12.38 -35.23 -0.44 -6.58 16 20 C 0.06 0.91 7.18 37.61 0.27 1.18 16 21 H 0.08 1.53 6.63 -51.92 -0.34 1.18 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 24 H 0.08 1.13 7.62 -51.93 -0.40 0.73 16 25 H 0.08 1.31 7.22 -51.93 -0.37 0.94 16 26 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.13 2.63 6.38 -51.93 -0.33 2.30 16 28 H 0.08 1.13 6.85 -51.93 -0.36 0.78 16 29 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -29.27 273.83 -4.05 -33.31 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.85 Total: 2.04 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 0.08 Total: 8.15 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.98 Total: -42.09 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.36 Total: -20.03 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.27 -4.05 -33.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.677 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds