Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 112.99836 * 2 1 4 4 C 1.50698 * 109.47350 * 65.37065 * 3 2 1 5 5 O 1.21297 * 120.00007 * 5.36422 * 4 3 2 6 6 N 1.34783 * 120.00409 * 185.36905 * 4 3 2 7 7 C 1.37094 * 120.00008 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00438 * 21.19065 * 7 6 4 9 9 C 1.38956 * 119.99756 * 201.19756 * 7 6 4 10 10 N 1.31416 * 119.99719 * 11.59994 * 9 7 6 11 11 Si 1.86800 * 119.99909 * 191.60459 * 9 7 6 12 12 H 1.48500 * 109.47213 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47080 * 119.99564 * 11 9 7 14 14 H 1.48494 * 109.47015 * 239.99671 * 11 9 7 15 15 C 1.46499 * 119.99634 * 0.02562 * 6 4 3 16 16 C 1.47201 * 109.47521 * 83.89080 * 15 6 4 17 17 N 5.21684 * 84.90617 * 345.37102 * 2 1 3 18 18 C 1.54034 * 113.81341 * 228.01521 * 2 1 3 19 19 O 1.44175 * 85.51657 * 268.35243 * 18 2 1 20 20 C 1.44178 * 93.34208 * 335.80744 * 19 18 2 21 21 H 1.09007 * 109.47203 * 291.96201 * 1 2 3 22 22 H 1.08998 * 109.47545 * 51.96121 * 1 2 3 23 23 H 1.09001 * 109.47143 * 171.96618 * 1 2 3 24 24 H 1.08999 * 109.47158 * 185.36510 * 3 2 1 25 25 H 1.08996 * 109.47359 * 305.36538 * 3 2 1 26 26 H 0.97004 * 119.99480 * 180.02562 * 10 9 7 27 27 H 1.08996 * 109.47071 * 203.89534 * 15 6 4 28 28 H 1.09001 * 109.47093 * 323.89231 * 15 6 4 29 29 H 1.08997 * 113.86841 * 22.49956 * 18 2 1 30 30 H 1.08997 * 113.86586 * 154.20349 * 18 2 1 31 31 H 1.08996 * 113.86562 * 270.04435 * 20 19 18 32 32 H 1.09002 * 113.98168 * 138.35511 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 6 1.7790 2.1021 1.2915 5 8 1.2018 1.4956 2.1692 6 7 2.1083 3.3967 1.4715 7 6 1.7905 4.0279 2.6462 8 1 1.5999 3.4475 3.5368 9 6 1.7136 5.4146 2.6910 10 7 1.7179 6.1093 1.5755 11 14 1.6041 6.2912 4.3369 12 1 1.6167 5.2895 5.4331 13 1 2.7639 7.2061 4.4886 14 1 0.3442 7.0748 4.3975 15 6 2.8048 4.1294 0.4112 16 6 1.8231 4.6366 -0.5613 17 7 1.0668 5.0278 -1.3124 18 6 2.1519 -0.9427 -1.0475 19 8 2.1442 -1.9305 0.0026 20 6 2.1520 -0.9397 1.0501 21 1 -0.3634 0.3844 0.9531 22 1 -0.3634 0.6332 -0.8093 23 1 -0.3633 -1.0176 -0.1436 24 1 3.2116 1.3430 -0.0961 25 1 1.7222 1.9752 -0.8380 26 1 1.6645 7.0773 1.6068 27 1 3.3509 4.9663 0.8464 28 1 3.5040 3.4621 -0.0927 29 1 1.4875 -1.1778 -1.8790 30 1 3.1510 -0.6477 -1.3682 31 1 3.1511 -0.6439 1.3699 32 1 1.4884 -1.1708 1.8834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = -30.711471 kcal Electronic energy + Delta-G solvation = -17346.016198 eV Core-core repulsion = 14500.941575 eV Total energy + Delta-G solvation = -2845.074623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79092 -40.18560 -37.54416 -36.15384 -34.07267 -33.52911 -29.52028 -28.87357 -27.38783 -27.03307 -25.86629 -21.29598 -19.78574 -19.43734 -18.25103 -17.92406 -16.93549 -16.80875 -16.52820 -16.14504 -15.74250 -15.42472 -14.69226 -14.63094 -14.24131 -13.81396 -13.60311 -13.31977 -13.24493 -13.06591 -12.91981 -12.72399 -12.40796 -12.29410 -12.07804 -11.97873 -11.61740 -11.29728 -11.07076 -10.53707 -10.22981 -9.84849 -8.34345 -5.96878 1.39208 1.47639 1.58735 1.87728 2.11339 2.30782 2.37507 2.83804 3.03491 3.07029 3.48819 3.65650 3.84609 4.01560 4.24608 4.29708 4.48906 4.60844 4.69623 4.72410 4.77573 4.95489 4.97995 5.03296 5.07532 5.25184 5.31031 5.40206 5.50210 6.10112 6.45316 7.05633 7.17548 7.41504 7.98882 8.67699 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.007697 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.393325 B = 3636.694306 C = 4166.193811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C -0.123 4.123 4 C 0.456 3.544 5 O -0.602 6.602 6 N -0.463 5.463 7 C -0.327 4.327 8 H 0.082 0.918 9 C 0.000 4.000 10 N -0.902 5.902 11 Si 0.986 3.014 12 H -0.272 1.272 13 H -0.265 1.265 14 H -0.292 1.292 15 C 0.222 3.778 16 C 0.262 3.738 17 N -0.515 5.515 18 C 0.050 3.950 19 O -0.406 6.406 20 C 0.057 3.943 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.271 0.729 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -7.141 -4.460 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.111 4.111 3 C -0.163 4.163 4 C 0.246 3.754 5 O -0.486 6.486 6 N -0.184 5.184 7 C -0.455 4.455 8 H 0.100 0.900 9 C -0.201 4.201 10 N -0.542 5.542 11 Si 0.811 3.189 12 H -0.197 1.197 13 H -0.190 1.190 14 H -0.218 1.218 15 C 0.096 3.904 16 C -0.055 4.055 17 N -0.196 5.196 18 C -0.026 4.026 19 O -0.326 6.326 20 C -0.020 4.020 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.143 0.857 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.021 -6.946 -5.157 10.002 hybrid contribution -0.297 1.053 1.296 1.696 sum 4.723 -5.893 -3.861 8.482 Atomic orbital electron populations 1.21513 0.93174 1.01765 1.01751 1.23349 0.97099 0.93953 0.96740 1.21761 1.03991 0.95507 0.95045 1.21003 0.81486 0.82801 0.90060 1.90507 1.45491 1.66041 1.46555 1.43820 1.51441 1.08962 1.14168 1.19661 1.47225 0.90000 0.88614 0.89986 1.25873 0.95949 0.96927 1.01322 1.69832 1.49677 1.07805 1.26933 0.84965 0.77642 0.77957 0.78332 1.19650 1.19031 1.21827 1.19086 0.88895 0.98453 0.83984 1.29801 0.93925 0.90756 0.91053 1.80878 1.10482 1.12042 1.16196 1.24308 1.01792 0.84863 0.91631 1.89590 1.95906 1.28972 1.18084 1.23913 1.00453 0.85696 0.91915 0.93538 0.92406 0.91536 0.85746 0.89390 0.91841 0.85676 0.84636 0.87831 0.87403 0.89478 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.80 71.98 0.63 -3.28 16 2 C -0.11 -3.16 0.78 -51.48 -0.04 -3.20 16 3 C -0.12 -3.60 3.72 29.85 0.11 -3.48 16 4 C 0.46 18.81 7.22 87.66 0.63 19.44 16 5 O -0.60 -29.07 13.37 -3.08 -0.04 -29.11 16 6 N -0.46 -20.25 2.60 -645.41 -1.68 -21.93 16 7 C -0.33 -16.41 9.32 84.04 0.78 -15.63 16 8 H 0.08 4.44 7.38 -2.91 -0.02 4.42 16 9 C 0.00 -0.01 5.09 84.93 0.43 0.43 16 10 N -0.90 -44.07 9.07 21.67 0.20 -43.88 16 11 Si 0.99 40.04 29.57 68.60 2.03 42.07 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 15 C 0.22 8.01 4.89 84.57 0.41 8.42 16 16 C 0.26 10.86 12.72 89.45 1.14 12.00 16 17 N -0.51 -23.47 18.53 20.00 0.37 -23.10 16 18 C 0.05 1.11 8.34 72.27 0.60 1.71 16 19 O -0.41 -11.77 12.38 -148.98 -1.84 -13.61 16 20 C 0.06 1.70 7.18 72.27 0.52 2.22 16 21 H 0.05 1.77 6.63 -2.38 -0.02 1.76 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 24 H 0.12 2.67 7.62 -2.39 -0.02 2.65 16 25 H 0.09 2.52 7.22 -2.39 -0.02 2.51 16 26 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 27 H 0.13 4.77 6.38 -2.39 -0.02 4.75 16 28 H 0.14 3.30 6.85 -2.39 -0.02 3.28 16 29 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 30 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 31 H 0.09 2.40 8.10 -2.39 -0.02 2.38 16 32 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -64.02 273.83 5.39 -58.63 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.13 Total: 12.30 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.23 Total: 18.62 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.11 Total: -88.91 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.88 Total: -42.72 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -64.02 5.39 -58.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.917 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds