Wall clock time and date at job start Sun Mar 29 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42903 * 112.93660 * 130.26023 * 3 2 1 5 5 C 1.53935 * 113.73429 * 358.69294 * 3 2 1 6 6 N 1.48184 * 86.09926 * 221.95538 * 5 3 2 7 7 C 1.46905 * 111.06727 * 137.52418 * 6 5 3 8 8 C 1.50698 * 109.47334 * 90.56453 * 7 6 5 9 9 O 1.21279 * 120.00007 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99820 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46938 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99923 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00037 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99704 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47024 * 89.99694 * 16 14 12 18 18 H 1.48500 * 109.46838 * 209.99979 * 16 14 12 19 19 H 1.48500 * 109.46948 * 329.99851 * 16 14 12 20 20 C 1.47957 * 90.80127 * 24.60257 * 6 5 3 21 21 H 4.45191 * 5.14226 * 180.02562 * 4 1 2 22 22 H 0.96700 * 113.99679 * 309.66311 * 4 3 2 23 23 H 1.09000 * 113.76137 * 336.23956 * 5 3 2 24 24 H 1.08998 * 113.75757 * 107.60152 * 5 3 2 25 25 H 1.09001 * 109.46857 * 210.56374 * 7 6 5 26 26 H 1.09001 * 109.46846 * 330.56108 * 7 6 5 27 27 H 0.96994 * 120.00284 * 0.02562 * 10 8 7 28 28 H 1.09001 * 109.47172 * 300.00278 * 11 10 8 29 29 H 1.08993 * 109.47223 * 60.00481 * 11 10 8 30 30 H 0.97003 * 120.00077 * 180.02562 * 15 14 12 31 31 H 1.09006 * 113.75754 * 221.08504 * 20 6 5 32 32 H 1.09000 * 113.85952 * 89.72677 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2025 0.8514 -1.0043 5 6 3.2662 -1.4079 0.0321 6 7 4.2318 -0.8502 1.0081 7 6 4.4627 -1.7864 2.1164 8 6 5.6219 -2.6884 1.7788 9 8 6.1986 -2.5639 0.7192 10 7 6.0177 -3.6333 2.6545 11 6 7.1442 -4.5105 2.3262 12 6 7.3811 -5.4708 3.4632 13 1 6.7555 -5.4313 4.3426 14 6 8.3966 -6.3998 3.3807 15 7 8.6037 -7.2374 4.3731 16 14 9.4793 -6.4675 1.8599 17 1 10.6494 -5.5720 2.0450 18 1 9.9500 -7.8600 1.6491 19 1 8.6990 -6.0242 0.6767 20 6 3.2654 0.2013 1.3948 21 1 -1.0501 -0.0001 0.0004 22 1 2.8366 0.7084 -1.8879 23 1 2.6075 -2.1683 0.4515 24 1 3.7192 -1.7098 -0.9121 25 1 4.6902 -1.2265 3.0235 26 1 3.5682 -2.3885 2.2757 27 1 5.5563 -3.7331 3.5018 28 1 6.9162 -5.0707 1.4194 29 1 8.0387 -3.9086 2.1661 30 1 9.3184 -7.8907 4.3153 31 1 3.7180 1.1827 1.5374 32 1 2.6058 -0.0858 2.2137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934442479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:08 Heat of formation + Delta-G solvation = 17.564840 kcal Electronic energy + Delta-G solvation = -16178.173042 eV Core-core repulsion = 13335.191837 eV Total energy + Delta-G solvation = -2842.981206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65949 -38.57399 -35.85855 -34.21656 -33.18316 -32.34776 -30.29230 -27.86220 -26.48735 -25.06128 -22.08834 -20.74978 -19.95770 -19.28264 -17.29302 -16.74775 -16.18876 -16.00452 -15.99506 -14.94487 -14.65883 -14.30590 -13.66021 -13.51586 -13.22017 -12.73263 -12.55101 -12.24518 -12.15259 -11.86596 -11.33276 -11.04057 -11.02004 -10.87600 -10.73461 -10.08782 -9.96021 -9.48992 -9.28367 -8.78063 -8.75945 -8.10954 -6.21052 -4.23198 2.29616 2.31685 3.25729 3.29556 3.34024 3.39885 3.43623 3.67188 3.88640 4.27572 4.34691 4.42390 4.75039 4.98873 5.13262 5.16197 5.25133 5.37090 5.47774 5.51555 5.55791 5.76189 6.14913 6.69062 6.86552 7.09364 7.14872 7.26243 7.30200 7.41144 8.15956 8.53928 8.76450 8.99391 9.39527 10.90894 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.053728 B = 0.004329 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.014000 B = 6465.901959 C = 6685.284912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.216 4.216 3 C 0.211 3.789 4 O -0.517 6.517 5 C -0.005 4.005 6 N -0.442 5.442 7 C -0.003 4.003 8 C 0.502 3.498 9 O -0.537 6.537 10 N -0.710 5.710 11 C 0.222 3.778 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.024 3.976 21 H 0.222 0.778 22 H 0.383 0.617 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.395 0.605 28 H 0.024 0.976 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.106 0.894 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 13.344 -6.425 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.217 4.217 3 C 0.169 3.831 4 O -0.322 6.322 5 C -0.134 4.134 6 N -0.164 5.164 7 C -0.134 4.134 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.360 5.360 11 C 0.100 3.900 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.105 4.105 21 H 0.238 0.762 22 H 0.231 0.769 23 H 0.098 0.902 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.228 0.772 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.335 13.641 -6.812 20.928 hybrid contribution -0.924 -0.793 -0.270 1.247 sum -15.259 12.847 -7.083 21.167 Atomic orbital electron populations 1.25080 0.95887 0.99343 0.98419 1.23618 0.94610 1.01349 1.02127 1.19290 0.80831 0.91644 0.91372 1.86637 1.65363 1.60386 1.19820 1.24787 0.93421 0.94976 1.00259 1.68493 1.31827 1.07276 1.08836 1.22663 0.98347 0.96061 0.96378 1.20227 0.85026 0.81252 0.84915 1.90660 1.56290 1.70172 1.24251 1.46172 1.35191 1.34441 1.20167 1.19465 0.84431 0.88959 0.97178 1.21101 1.17709 1.16196 1.03126 0.90288 1.24799 0.96762 0.94704 0.96380 1.69878 1.31796 1.19853 1.31520 0.86809 0.81332 0.77601 0.83912 1.19802 1.20916 1.18504 1.24173 0.93556 0.99484 0.93280 0.76169 0.76902 0.90212 0.87729 0.87884 0.91097 0.77190 0.95827 0.96157 0.92268 0.87560 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.22 -2.12 12.70 -37.12 -0.47 -2.60 16 3 C 0.21 2.33 1.79 -92.47 -0.17 2.16 16 4 O -0.52 -5.88 13.48 -35.23 -0.47 -6.35 16 5 C -0.01 -0.07 7.34 -2.64 -0.02 -0.09 16 6 N -0.44 -6.30 5.65 -239.59 -1.35 -7.65 16 7 C 0.00 -0.04 5.28 -4.97 -0.03 -0.06 16 8 C 0.50 9.76 7.87 -10.99 -0.09 9.67 16 9 O -0.54 -12.72 16.43 5.56 0.09 -12.63 16 10 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 11 C 0.22 5.54 4.50 -5.19 -0.02 5.51 16 12 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 16 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 20 C 0.02 0.26 7.32 -2.76 -0.02 0.24 16 21 H 0.22 0.90 7.80 -54.08 -0.42 0.48 16 22 H 0.38 2.75 9.04 45.56 0.41 3.16 16 23 H 0.08 0.89 7.43 -51.93 -0.39 0.50 16 24 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 26 H 0.07 0.81 7.39 -51.93 -0.38 0.43 16 27 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 28 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 29 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 0.75 7.87 -51.93 -0.41 0.35 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -35.05 287.77 -5.45 -40.50 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.14 Total: 4.64 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.68 Total: 0.83 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.92 Total: -48.33 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.38 Total: -18.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.05 -5.45 -40.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934442479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.066 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds