Wall clock time and date at job start Sun Mar 29 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42903 * 112.93660 * 130.26023 * 3 2 1 5 5 C 1.53935 * 113.73429 * 358.69294 * 3 2 1 6 6 N 1.48184 * 86.09926 * 221.95538 * 5 3 2 7 7 C 1.46905 * 111.06727 * 137.52418 * 6 5 3 8 8 C 1.50698 * 109.47334 * 90.56453 * 7 6 5 9 9 O 1.21279 * 120.00007 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99820 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46938 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99923 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00037 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99704 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47024 * 89.99694 * 16 14 12 18 18 H 1.48500 * 109.46838 * 209.99979 * 16 14 12 19 19 H 1.48500 * 109.46948 * 329.99851 * 16 14 12 20 20 C 1.47957 * 90.80127 * 24.60257 * 6 5 3 21 21 H 4.45191 * 5.14226 * 180.02562 * 4 1 2 22 22 H 0.96700 * 113.99679 * 309.66311 * 4 3 2 23 23 H 1.09000 * 113.76137 * 336.23956 * 5 3 2 24 24 H 1.08998 * 113.75757 * 107.60152 * 5 3 2 25 25 H 1.09001 * 109.46857 * 210.56374 * 7 6 5 26 26 H 1.09001 * 109.46846 * 330.56108 * 7 6 5 27 27 H 0.96994 * 120.00284 * 0.02562 * 10 8 7 28 28 H 1.09001 * 109.47172 * 300.00278 * 11 10 8 29 29 H 1.08993 * 109.47223 * 60.00481 * 11 10 8 30 30 H 0.97003 * 120.00077 * 180.02562 * 15 14 12 31 31 H 1.09006 * 113.75754 * 221.08504 * 20 6 5 32 32 H 1.09000 * 113.85952 * 89.72677 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2025 0.8514 -1.0043 5 6 3.2662 -1.4079 0.0321 6 7 4.2318 -0.8502 1.0081 7 6 4.4627 -1.7864 2.1164 8 6 5.6219 -2.6884 1.7788 9 8 6.1986 -2.5639 0.7192 10 7 6.0177 -3.6333 2.6545 11 6 7.1442 -4.5105 2.3262 12 6 7.3811 -5.4708 3.4632 13 1 6.7555 -5.4313 4.3426 14 6 8.3966 -6.3998 3.3807 15 7 8.6037 -7.2374 4.3731 16 14 9.4793 -6.4675 1.8599 17 1 10.6494 -5.5720 2.0450 18 1 9.9500 -7.8600 1.6491 19 1 8.6990 -6.0242 0.6767 20 6 3.2654 0.2013 1.3948 21 1 -1.0501 -0.0001 0.0004 22 1 2.8366 0.7084 -1.8879 23 1 2.6075 -2.1683 0.4515 24 1 3.7192 -1.7098 -0.9121 25 1 4.6902 -1.2265 3.0235 26 1 3.5682 -2.3885 2.2757 27 1 5.5563 -3.7331 3.5018 28 1 6.9162 -5.0707 1.4194 29 1 8.0387 -3.9086 2.1661 30 1 9.3184 -7.8907 4.3153 31 1 3.7180 1.1827 1.5374 32 1 2.6058 -0.0858 2.2137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934442479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:08 Heat of formation + Delta-G solvation = -13.757868 kcal Electronic energy + Delta-G solvation = -16179.531297 eV Core-core repulsion = 13335.191837 eV Total energy + Delta-G solvation = -2844.339460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.62517 -40.09959 -36.78689 -36.08299 -34.40632 -33.85520 -31.52376 -29.63420 -27.36161 -26.22789 -23.92513 -21.84564 -21.33973 -20.18696 -19.11987 -17.76116 -17.56607 -17.18397 -17.03903 -16.50858 -16.04848 -15.91016 -15.09199 -14.77774 -14.46520 -14.22945 -14.09966 -13.75199 -13.31939 -13.04319 -12.78450 -12.69041 -12.33597 -11.94428 -11.74490 -11.66369 -11.61436 -10.92752 -10.86015 -10.80949 -9.92828 -9.80465 -8.40977 -6.47713 1.31890 1.34130 1.46846 1.64820 1.68435 1.76066 2.24928 2.28142 2.77470 2.94452 3.04095 3.34260 3.60913 3.82161 4.02347 4.15716 4.24006 4.36895 4.53311 4.68751 4.79266 4.81576 5.00460 5.02115 5.22623 5.25610 5.53385 5.78814 6.09916 6.53314 6.54359 6.66017 6.87865 7.15807 7.45900 8.73687 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.053728 B = 0.004329 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.014000 B = 6465.901959 C = 6685.284912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.260 4.260 3 C 0.218 3.782 4 O -0.537 6.537 5 C -0.009 4.009 6 N -0.479 5.479 7 C 0.010 3.990 8 C 0.499 3.501 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.233 3.767 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.027 3.973 15 N -0.930 5.930 16 Si 0.936 3.064 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.263 1.263 20 C 0.029 3.971 21 H 0.256 0.744 22 H 0.397 0.603 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.409 0.591 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.273 0.727 31 H 0.104 0.896 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.706 14.293 -6.599 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.261 4.261 3 C 0.176 3.824 4 O -0.345 6.345 5 C -0.138 4.138 6 N -0.202 5.202 7 C -0.121 4.121 8 C 0.286 3.714 9 O -0.463 6.463 10 N -0.359 5.359 11 C 0.109 3.891 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.187 1.187 20 C -0.099 4.099 21 H 0.272 0.728 22 H 0.247 0.753 23 H 0.111 0.889 24 H 0.102 0.898 25 H 0.148 0.852 26 H 0.120 0.880 27 H 0.245 0.755 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.135 14.606 -6.972 22.854 hybrid contribution -0.467 -1.054 -0.208 1.171 sum -16.602 13.552 -7.180 22.602 Atomic orbital electron populations 1.25918 0.96579 0.96909 0.96046 1.23502 0.94644 1.03564 1.04344 1.19056 0.81880 0.90306 0.91170 1.86584 1.66212 1.60679 1.21044 1.24807 0.93374 0.96447 0.99191 1.68409 1.33868 1.08356 1.09565 1.22627 0.96633 0.95650 0.97231 1.21243 0.85696 0.80807 0.83645 1.90635 1.58139 1.71341 1.26204 1.46022 1.34322 1.34305 1.21264 1.19055 0.85684 0.88834 0.95521 1.21297 1.17262 1.16610 1.03225 0.92060 1.25583 0.98189 0.94475 0.99084 1.69972 1.32818 1.20753 1.33373 0.85873 0.79635 0.78206 0.80260 1.19082 1.19643 1.18721 1.24255 0.93048 0.98342 0.94257 0.72768 0.75264 0.88862 0.89824 0.85245 0.87999 0.75519 0.97198 0.97422 0.91817 0.87767 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 19.25 74.32 1.43 -0.25 16 2 C -0.26 -4.48 12.70 31.13 0.40 -4.08 16 3 C 0.22 4.51 1.79 -11.95 -0.02 4.49 16 4 O -0.54 -11.95 13.48 -148.98 -2.01 -13.96 16 5 C -0.01 -0.22 7.34 86.37 0.63 0.41 16 6 N -0.48 -13.00 5.65 -915.15 -5.17 -18.17 16 7 C 0.01 0.25 5.28 85.56 0.45 0.70 16 8 C 0.50 19.02 7.87 87.66 0.69 19.71 16 9 O -0.58 -27.83 16.43 -3.03 -0.05 -27.88 16 10 N -0.71 -28.45 5.55 -466.79 -2.59 -31.04 16 11 C 0.23 11.66 4.50 85.63 0.38 12.05 16 12 C -0.55 -30.37 9.83 25.60 0.25 -30.12 16 13 H 0.06 3.55 7.84 -2.91 -0.02 3.52 16 14 C 0.03 1.54 5.47 84.66 0.46 2.01 16 15 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 16 Si 0.94 44.74 27.47 68.60 1.88 46.62 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.26 -12.56 6.54 99.48 0.65 -11.90 16 20 C 0.03 0.57 7.32 86.41 0.63 1.20 16 21 H 0.26 0.89 7.80 -4.41 -0.03 0.85 16 22 H 0.40 5.60 9.04 -74.06 -0.67 4.93 16 23 H 0.09 1.91 7.43 -2.39 -0.02 1.89 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.13 2.61 8.08 -2.39 -0.02 2.59 16 26 H 0.10 1.98 7.39 -2.39 -0.02 1.96 16 27 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 28 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 29 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.11 1.59 7.87 -2.39 -0.02 1.57 16 Total: -1.00 -76.08 287.77 -2.67 -78.75 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.35 Total: 15.02 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.31 Total: 6.11 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -7.46 Total: -104.66 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -2.06 Total: -41.84 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -76.08 -2.67 -78.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934442479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.989 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds