Wall clock time and date at job start Sun Mar 29 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30837 * 125.89861 * 2 1 4 4 N 1.40088 * 108.20852 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03866 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.91997 * 359.75513 * 4 3 2 7 7 C 1.35309 * 107.74907 * 0.39508 * 6 4 3 8 8 C 1.50696 * 126.04430 * 179.87517 * 7 6 4 9 9 C 1.52998 * 109.46969 * 264.68778 * 8 7 6 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21211 * 119.99329 * 359.97438 * 10 9 8 12 12 O 1.34307 * 120.00428 * 179.72224 * 10 9 8 13 13 C 1.34913 * 117.00319 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99818 * 0.02562 * 13 12 10 15 15 C 1.38752 * 120.00108 * 180.02562 * 13 12 10 16 16 N 1.31448 * 120.00068 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47142 * 59.99645 * 17 15 13 19 19 H 1.48500 * 109.47334 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47018 * 300.00159 * 17 15 13 21 21 H 1.09004 * 109.46845 * 269.97408 * 1 2 3 22 22 H 1.09008 * 109.47353 * 29.97017 * 1 2 3 23 23 H 1.08993 * 109.47317 * 149.97716 * 1 2 3 24 24 H 1.08998 * 109.47184 * 89.97483 * 5 4 3 25 25 H 1.09001 * 109.46581 * 209.97124 * 5 4 3 26 26 H 1.08994 * 109.47327 * 329.96644 * 5 4 3 27 27 H 1.08000 * 126.12483 * 180.23639 * 6 4 3 28 28 H 1.09000 * 109.47664 * 144.68706 * 8 7 6 29 29 H 1.09002 * 109.46824 * 24.68177 * 8 7 6 30 30 H 1.09001 * 109.47671 * 59.99812 * 9 8 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 9 8 7 32 32 H 0.97001 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6142 -0.7153 0.0045 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0003 9 6 1.5813 -3.0116 -1.4371 10 6 1.1146 -4.4445 -1.4370 11 8 1.0152 -5.0493 -0.3912 12 8 0.8040 -5.0499 -2.5950 13 6 0.3935 -6.3331 -2.5245 14 1 0.3266 -6.8268 -1.5664 15 6 0.0574 -7.0186 -3.6831 16 7 0.1394 -6.4179 -4.8495 17 14 -0.5117 -8.7951 -3.5856 18 1 -1.7377 -8.8771 -2.7517 19 1 -0.8084 -9.2956 -4.9518 20 1 0.5582 -9.6248 -2.9754 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5141 24 1 5.0827 1.7155 1.0275 25 1 5.6093 0.9984 -0.5142 26 1 4.5564 2.4334 -0.5139 27 1 4.4891 -1.3485 0.0091 28 1 0.9473 -2.6502 0.5897 29 1 2.6330 -3.1999 0.4335 30 1 2.4939 -2.9272 -2.0272 31 1 0.8082 -2.3774 -1.8710 32 1 -0.0959 -6.8970 -5.6594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116836222.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:55 Heat of formation + Delta-G solvation = -16.050600 kcal Electronic energy + Delta-G solvation = -16212.903545 eV Core-core repulsion = 13368.464664 eV Total energy + Delta-G solvation = -2844.438880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.20908 -38.87300 -35.43720 -34.33994 -32.69612 -32.05851 -29.96627 -28.88260 -26.14685 -25.05644 -23.33192 -20.67262 -19.79310 -19.20769 -17.64355 -16.76890 -16.15523 -15.54116 -15.12016 -14.50666 -14.30993 -14.18375 -13.58360 -13.51588 -13.00212 -12.65264 -12.50843 -12.17153 -12.05319 -11.98447 -11.53028 -11.40663 -11.13120 -10.75720 -10.42380 -10.29697 -10.20616 -9.72943 -9.16105 -8.94900 -8.51022 -8.21061 -6.34241 -4.02077 1.90845 2.51391 2.80334 3.18044 3.22547 3.26827 3.64211 4.02745 4.42559 4.73428 4.83233 4.96346 5.00783 5.18259 5.20666 5.34909 5.45595 5.63806 5.68997 5.73798 5.94696 5.98982 6.09461 6.15900 6.53043 6.58229 6.80731 6.91959 7.05075 7.46294 7.77431 8.03131 8.80874 9.14760 9.95675 10.84028 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048846 B = 0.004412 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.090108 B = 6345.139986 C = 6431.954841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.081 3.919 3 N -0.303 5.303 4 N -0.383 5.383 5 C 0.106 3.894 6 C 0.055 3.945 7 C -0.224 4.224 8 C -0.024 4.024 9 C -0.096 4.096 10 C 0.397 3.603 11 O -0.559 6.559 12 O -0.218 6.218 13 C -0.382 4.382 14 H 0.094 0.906 15 C 0.041 3.959 16 N -0.868 5.868 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.270 1.270 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.173 0.827 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 13.016 7.332 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 N -0.126 5.126 4 N -0.165 5.165 5 C -0.036 4.036 6 C -0.090 4.090 7 C -0.236 4.236 8 C -0.063 4.063 9 C -0.135 4.135 10 C 0.244 3.756 11 O -0.457 6.457 12 O -0.125 6.125 13 C -0.459 4.459 14 H 0.112 0.888 15 C -0.163 4.163 16 N -0.505 5.505 17 Si 0.767 3.233 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.196 1.196 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.190 0.810 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.825 14.181 7.342 17.366 hybrid contribution -0.030 -1.676 -0.059 1.677 sum 6.795 12.505 7.283 15.987 Atomic orbital electron populations 1.20227 0.86666 1.03590 1.02989 1.22288 0.96932 0.90267 0.98997 1.77249 0.86423 1.22844 1.26129 1.48291 1.05434 1.04750 1.58068 1.21780 0.83823 0.94984 1.03002 1.22352 0.99391 0.84701 1.02601 1.20080 0.91732 0.96470 1.15269 1.19607 1.02170 0.89032 0.95499 1.21088 1.02772 0.91325 0.98269 1.23326 0.79299 0.89720 0.83259 1.90541 1.54485 1.67208 1.33442 1.83888 1.69503 1.27510 1.31602 1.21161 1.44653 0.84764 0.95277 0.88827 1.25317 0.96704 1.00102 0.94130 1.69991 1.45478 1.37299 0.97761 0.85766 0.79389 0.80610 0.77515 1.19523 1.20451 1.19555 0.90553 0.91037 0.89879 0.91114 0.89596 0.89538 0.80958 0.90470 0.90779 0.89471 0.89317 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.21 36.00 0.37 -0.55 16 2 C 0.08 1.18 7.22 -82.41 -0.59 0.59 16 3 N -0.30 -4.51 12.58 33.67 0.42 -4.09 16 4 N -0.38 -4.76 4.01 -68.17 -0.27 -5.03 16 5 C 0.11 0.79 11.47 59.85 0.69 1.47 16 6 C 0.05 0.68 11.40 -17.22 -0.20 0.49 16 7 C -0.22 -3.24 5.35 -105.06 -0.56 -3.81 16 8 C -0.02 -0.39 4.62 -27.89 -0.13 -0.52 16 9 C -0.10 -1.77 5.79 -27.88 -0.16 -1.93 16 10 C 0.40 9.85 7.91 36.01 0.28 10.13 16 11 O -0.56 -14.97 15.22 -19.05 -0.29 -15.26 16 12 O -0.22 -6.35 9.75 -20.67 -0.20 -6.55 16 13 C -0.38 -11.50 9.64 30.92 0.30 -11.20 16 14 H 0.09 2.82 6.86 -52.49 -0.36 2.46 16 15 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 16 N -0.87 -25.87 13.67 55.48 0.76 -25.11 16 17 Si 0.94 21.59 29.55 -169.99 -5.02 16.57 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 23 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.07 1.19 8.10 -51.93 -0.42 0.76 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.53 7.88 -51.93 -0.41 1.12 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 289.01 15.07 4.36 4.36 Total: -1.00 -35.90 289.01 -4.46 -40.35 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.10 Total: -0.99 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.10 Total: -4.25 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.91 Total: -34.22 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.49 Total: -21.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.90 -4.46 -40.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116836222.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.300 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds