Wall clock time and date at job start Sun Mar 29 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30837 * 125.89861 * 2 1 4 4 N 1.40088 * 108.20852 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03866 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.91997 * 359.75513 * 4 3 2 7 7 C 1.35309 * 107.74907 * 0.39508 * 6 4 3 8 8 C 1.50696 * 126.04430 * 179.87517 * 7 6 4 9 9 C 1.52998 * 109.46969 * 264.68778 * 8 7 6 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21211 * 119.99329 * 359.97438 * 10 9 8 12 12 O 1.34307 * 120.00428 * 179.72224 * 10 9 8 13 13 C 1.34913 * 117.00319 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99818 * 0.02562 * 13 12 10 15 15 C 1.38752 * 120.00108 * 180.02562 * 13 12 10 16 16 N 1.31448 * 120.00068 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47142 * 59.99645 * 17 15 13 19 19 H 1.48500 * 109.47334 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47018 * 300.00159 * 17 15 13 21 21 H 1.09004 * 109.46845 * 269.97408 * 1 2 3 22 22 H 1.09008 * 109.47353 * 29.97017 * 1 2 3 23 23 H 1.08993 * 109.47317 * 149.97716 * 1 2 3 24 24 H 1.08998 * 109.47184 * 89.97483 * 5 4 3 25 25 H 1.09001 * 109.46581 * 209.97124 * 5 4 3 26 26 H 1.08994 * 109.47327 * 329.96644 * 5 4 3 27 27 H 1.08000 * 126.12483 * 180.23639 * 6 4 3 28 28 H 1.09000 * 109.47664 * 144.68706 * 8 7 6 29 29 H 1.09002 * 109.46824 * 24.68177 * 8 7 6 30 30 H 1.09001 * 109.47671 * 59.99812 * 9 8 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 9 8 7 32 32 H 0.97001 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6142 -0.7153 0.0045 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0003 9 6 1.5813 -3.0116 -1.4371 10 6 1.1146 -4.4445 -1.4370 11 8 1.0152 -5.0493 -0.3912 12 8 0.8040 -5.0499 -2.5950 13 6 0.3935 -6.3331 -2.5245 14 1 0.3266 -6.8268 -1.5664 15 6 0.0574 -7.0186 -3.6831 16 7 0.1394 -6.4179 -4.8495 17 14 -0.5117 -8.7951 -3.5856 18 1 -1.7377 -8.8771 -2.7517 19 1 -0.8084 -9.2956 -4.9518 20 1 0.5582 -9.6248 -2.9754 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5141 24 1 5.0827 1.7155 1.0275 25 1 5.6093 0.9984 -0.5142 26 1 4.5564 2.4334 -0.5139 27 1 4.4891 -1.3485 0.0091 28 1 0.9473 -2.6502 0.5897 29 1 2.6330 -3.1999 0.4335 30 1 2.4939 -2.9272 -2.0272 31 1 0.8082 -2.3774 -1.8710 32 1 -0.0959 -6.8970 -5.6594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116836222.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:55 Heat of formation + Delta-G solvation = -39.499362 kcal Electronic energy + Delta-G solvation = -16213.920359 eV Core-core repulsion = 13368.464664 eV Total energy + Delta-G solvation = -2845.455695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.21215 -40.92221 -37.41237 -35.53412 -34.27075 -33.89122 -30.92720 -30.01504 -27.78516 -26.52666 -24.65160 -21.85650 -21.39934 -20.33525 -19.82657 -18.47879 -17.37101 -16.90915 -16.61974 -16.31609 -16.13987 -15.34944 -14.74992 -14.49826 -14.30097 -13.99400 -13.76937 -13.50325 -13.29362 -13.07877 -12.94307 -12.87635 -12.71289 -12.32074 -12.14757 -12.03504 -11.94500 -11.35855 -10.98101 -10.66555 -10.14097 -9.26012 -8.50418 -6.30524 0.93581 1.35772 1.36080 1.52036 1.69415 1.70793 1.72420 2.17190 2.89994 3.00772 3.62295 3.92472 4.14426 4.22553 4.28149 4.44887 4.46670 4.48775 4.67022 4.70835 4.76539 4.81526 4.94754 5.07349 5.11067 5.23226 5.27784 5.33003 5.75472 5.87298 6.17657 6.72993 6.76835 6.94824 7.83279 8.70273 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048846 B = 0.004412 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.090108 B = 6345.139986 C = 6431.954841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.069 3.931 3 N -0.333 5.333 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.067 3.933 7 C -0.251 4.251 8 C -0.009 4.009 9 C -0.084 4.084 10 C 0.396 3.604 11 O -0.582 6.582 12 O -0.250 6.250 13 C -0.422 4.422 14 H 0.082 0.918 15 C -0.005 4.005 16 N -0.906 5.906 17 Si 1.017 2.983 18 H -0.262 1.262 19 H -0.261 1.261 20 H -0.261 1.261 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.206 0.794 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 13.086 7.497 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 N -0.157 5.157 4 N -0.163 5.163 5 C -0.045 4.045 6 C -0.080 4.080 7 C -0.263 4.263 8 C -0.047 4.047 9 C -0.122 4.122 10 C 0.244 3.756 11 O -0.480 6.480 12 O -0.158 6.158 13 C -0.498 4.498 14 H 0.100 0.900 15 C -0.205 4.205 16 N -0.543 5.543 17 Si 0.836 3.164 18 H -0.186 1.186 19 H -0.185 1.185 20 H -0.186 1.186 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.132 0.868 26 H 0.108 0.892 27 H 0.222 0.778 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.767 14.300 7.519 17.926 hybrid contribution -0.218 -1.567 -0.053 1.583 sum 7.549 12.732 7.465 16.578 Atomic orbital electron populations 1.20274 0.85818 1.03673 1.03741 1.22594 0.97855 0.90318 0.98910 1.77197 0.87783 1.23396 1.27298 1.48710 1.05721 1.05345 1.56554 1.22186 0.82820 0.94885 1.04586 1.22832 0.99736 0.85153 1.00250 1.19955 0.92856 0.95325 1.18140 1.19390 1.01723 0.90267 0.93369 1.21223 1.03511 0.86820 1.00600 1.24602 0.77399 0.91604 0.81958 1.90509 1.55053 1.68405 1.34002 1.83914 1.70695 1.27547 1.33683 1.21394 1.47063 0.85765 0.95595 0.90032 1.26536 0.95754 1.05054 0.93181 1.70080 1.45951 1.39622 0.98673 0.84699 0.79165 0.74019 0.78565 1.18616 1.18476 1.18554 0.89482 0.90269 0.90404 0.89510 0.86786 0.89202 0.77759 0.91514 0.90941 0.87746 0.88123 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 10.21 71.23 0.73 -1.08 16 2 C 0.07 1.94 7.22 43.10 0.31 2.25 16 3 N -0.33 -9.47 12.58 -47.39 -0.60 -10.07 16 4 N -0.38 -8.58 4.01 -369.58 -1.48 -10.06 16 5 C 0.09 1.13 11.47 127.77 1.47 2.60 16 6 C 0.07 1.51 11.40 83.54 0.95 2.46 16 7 C -0.25 -6.93 5.35 -20.15 -0.11 -7.04 16 8 C -0.01 -0.27 4.62 29.85 0.14 -0.14 16 9 C -0.08 -3.03 5.79 29.85 0.17 -2.86 16 10 C 0.40 19.97 7.91 71.24 0.56 20.53 16 11 O -0.58 -31.74 15.22 20.77 0.32 -31.42 16 12 O -0.25 -14.96 9.75 14.98 0.15 -14.81 16 13 C -0.42 -26.03 9.64 67.94 0.66 -25.37 16 14 H 0.08 5.07 6.86 -2.91 -0.02 5.05 16 15 C -0.01 -0.31 5.49 84.87 0.47 0.15 16 16 N -0.91 -54.33 13.67 21.62 0.30 -54.03 16 17 Si 1.02 43.86 29.55 68.60 2.03 45.88 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.08 1.88 7.70 -2.39 -0.02 1.87 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 29 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.10 3.43 7.88 -2.39 -0.02 3.42 16 32 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -78.52 289.01 7.17 -71.36 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.11 Total: 11.66 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.34 Total: -8.51 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.78 Total: -74.16 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: 0.46 Total: -46.23 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.52 7.17 -71.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116836222.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.858 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds