Wall clock time and date at job start Sun Mar 29 2020 22:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 C 1.50704 * 109.47104 * 300.00372 * 4 3 2 6 6 O 1.21292 * 120.00206 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.37095 * 119.99737 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00035 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99893 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00165 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00077 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47063 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47262 * 120.00387 * 12 10 8 15 15 H 1.48501 * 109.46929 * 240.00219 * 12 10 8 16 16 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 17 17 C 1.53290 * 109.06075 * 297.02715 * 16 3 2 18 18 O 1.42901 * 109.46203 * 302.44341 * 17 16 3 19 19 C 1.42903 * 114.09356 * 61.15883 * 18 17 16 20 20 C 1.53091 * 109.41633 * 298.84001 * 19 18 17 21 21 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 22 22 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 23 23 H 0.96997 * 119.99974 * 0.02562 * 7 5 4 24 24 H 0.96999 * 120.00133 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.52621 * 57.01539 * 16 3 2 26 26 H 1.08991 * 109.52723 * 177.20597 * 16 3 2 27 27 H 1.09002 * 109.45261 * 182.44496 * 17 16 3 28 28 H 1.09003 * 109.46577 * 62.44930 * 17 16 3 29 29 H 1.09000 * 109.47917 * 178.85973 * 19 18 17 30 30 H 1.09000 * 109.49157 * 58.82974 * 19 18 17 31 31 H 1.08994 * 109.52621 * 297.70472 * 20 19 18 32 32 H 1.09002 * 109.57258 * 177.54376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 6 2.6182 0.1776 -2.4734 6 8 1.9209 -0.8139 -2.4292 7 7 2.9447 0.7193 -3.6636 8 6 2.4892 0.1493 -4.8242 9 1 1.8683 -0.7335 -4.7848 10 6 2.8254 0.7080 -6.0512 11 7 3.5804 1.7825 -6.0991 12 14 2.2041 -0.0682 -7.6327 13 1 1.3789 -1.2595 -7.3085 14 1 1.3792 0.9171 -8.3769 15 1 3.3598 -0.4789 -8.4698 16 6 3.1211 -1.4396 -0.0923 17 6 2.6685 -2.2130 1.1514 18 8 3.1524 -1.5545 2.3237 19 6 2.6676 -0.2200 2.4854 20 6 3.1201 0.6332 1.2976 21 1 2.7562 1.8293 -1.1292 22 1 4.2093 0.8040 -1.1963 23 1 3.5026 1.5119 -3.6989 24 1 3.8154 2.1723 -6.9557 25 1 2.7161 -1.9141 -0.9862 26 1 4.2098 -1.4360 -0.1423 27 1 3.0668 -3.2269 1.1133 28 1 1.5794 -2.2511 1.1791 29 1 3.0652 0.2018 3.4084 30 1 1.5786 -0.2316 2.5306 31 1 4.2089 0.6788 1.2757 32 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118748779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:00 Heat of formation + Delta-G solvation = -66.778214 kcal Electronic energy + Delta-G solvation = -17079.504333 eV Core-core repulsion = 14232.865738 eV Total energy + Delta-G solvation = -2846.638595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15798 -38.11501 -36.07712 -34.34452 -33.74017 -31.38248 -31.06764 -28.87303 -25.28239 -23.64697 -23.43605 -21.61465 -19.36942 -18.00557 -16.86881 -16.11363 -15.80020 -15.68538 -14.91120 -14.65631 -14.31235 -13.92397 -13.87320 -13.43779 -13.16580 -12.53616 -12.15421 -11.93613 -11.77313 -11.66290 -11.49508 -11.33745 -11.26067 -11.07077 -10.52544 -10.38128 -10.32763 -10.27445 -9.58115 -9.50238 -8.39626 -8.04201 -6.49344 -3.90185 3.11438 3.20906 3.23549 3.25672 3.30615 3.78063 3.88665 4.09047 4.18433 4.55107 4.81144 4.92563 5.01118 5.08657 5.19208 5.28856 5.45004 5.59608 5.61354 5.69534 5.82418 5.90041 5.91403 6.08691 6.17052 6.25643 6.59006 7.20430 7.49036 7.97268 8.04433 8.50914 9.09542 9.44575 9.94546 10.67982 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046257 B = 0.005796 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.172637 B = 4829.982957 C = 4910.889608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.235 3.765 3 C 0.060 3.940 4 C -0.124 4.124 5 C 0.434 3.566 6 O -0.588 6.588 7 N -0.556 5.556 8 C -0.301 4.301 9 H 0.104 0.896 10 C 0.024 3.976 11 N -0.899 5.899 12 Si 0.929 3.071 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.280 1.280 16 C -0.153 4.153 17 C 0.058 3.942 18 O -0.383 6.383 19 C 0.059 3.941 20 C -0.145 4.145 21 H 0.086 0.914 22 H 0.099 0.901 23 H 0.393 0.607 24 H 0.272 0.728 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -0.754 12.595 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.083 4.083 3 C 0.056 3.944 4 C -0.166 4.166 5 C 0.220 3.780 6 O -0.474 6.474 7 N -0.190 5.190 8 C -0.431 4.431 9 H 0.122 0.878 10 C -0.178 4.178 11 N -0.539 5.539 12 Si 0.756 3.244 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.192 4.192 17 C -0.019 4.019 18 O -0.302 6.302 19 C -0.018 4.018 20 C -0.184 4.184 21 H 0.105 0.895 22 H 0.117 0.883 23 H 0.227 0.773 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.029 -1.388 12.563 12.801 hybrid contribution 0.317 0.461 -1.272 1.389 sum 2.345 -0.927 11.291 11.570 Atomic orbital electron populations 1.81071 1.12849 1.08477 1.09430 1.28590 0.94551 0.93020 0.92165 1.17979 0.82286 0.98290 0.95826 1.21646 1.02539 0.99818 0.92582 1.19761 0.86255 0.87330 0.84685 1.90470 1.42423 1.27917 1.86604 1.41881 1.45325 1.27202 1.04631 1.19771 1.29304 1.11368 0.82621 0.87783 1.25280 0.96735 0.96128 0.99648 1.69612 1.36464 1.20802 1.27066 0.85804 0.78532 0.79124 0.80932 1.19202 1.20706 1.20631 1.22603 1.02204 0.93146 1.01207 1.22718 0.98343 0.96467 0.84333 1.87901 1.71743 1.26673 1.43852 1.22577 0.98347 0.82952 0.97947 1.22336 1.03052 0.99842 0.93164 0.89541 0.88269 0.77313 0.91793 0.86229 0.89765 0.88384 0.93484 0.88427 0.93487 0.88777 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.08 18.54 42.15 0.78 -8.30 16 2 C 0.23 4.23 9.91 -20.76 -0.21 4.03 16 3 C 0.06 0.87 0.49 -157.11 -0.08 0.80 16 4 C -0.12 -1.92 4.75 -27.88 -0.13 -2.05 16 5 C 0.43 9.47 7.22 -10.98 -0.08 9.39 16 6 O -0.59 -14.63 12.09 5.55 0.07 -14.57 16 7 N -0.56 -13.44 5.29 -10.96 -0.06 -13.49 16 8 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 9 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 10 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 11 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 12 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 C -0.15 -2.22 4.58 -26.49 -0.12 -2.34 16 17 C 0.06 0.76 6.62 37.31 0.25 1.01 16 18 O -0.38 -4.93 10.77 -35.23 -0.38 -5.31 16 19 C 0.06 0.64 6.61 37.20 0.25 0.89 16 20 C -0.15 -1.54 4.90 -26.59 -0.13 -1.67 16 21 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.12 2.14 5.62 -51.93 -0.29 1.85 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 271.60 15.07 4.09 4.09 Total: -1.00 -31.50 271.60 -4.14 -35.64 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.85 Total: 7.07 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.49 Total: 2.28 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 1.45 Total: -44.95 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.31 Total: -19.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.50 -4.14 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118748779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.135 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds