Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 C 1.50704 * 109.47104 * 300.00372 * 4 3 2 6 6 O 1.21292 * 120.00206 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.37095 * 119.99737 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00035 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99893 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00165 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00077 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47063 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47262 * 120.00387 * 12 10 8 15 15 H 1.48501 * 109.46929 * 240.00219 * 12 10 8 16 16 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 17 17 C 1.53290 * 109.06075 * 297.02715 * 16 3 2 18 18 O 1.42901 * 109.46203 * 302.44341 * 17 16 3 19 19 C 1.42903 * 114.09356 * 61.15883 * 18 17 16 20 20 C 1.53091 * 109.41633 * 298.84001 * 19 18 17 21 21 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 22 22 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 23 23 H 0.96997 * 119.99974 * 0.02562 * 7 5 4 24 24 H 0.96999 * 120.00133 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.52621 * 57.01539 * 16 3 2 26 26 H 1.08991 * 109.52723 * 177.20597 * 16 3 2 27 27 H 1.09002 * 109.45261 * 182.44496 * 17 16 3 28 28 H 1.09003 * 109.46577 * 62.44930 * 17 16 3 29 29 H 1.09000 * 109.47917 * 178.85973 * 19 18 17 30 30 H 1.09000 * 109.49157 * 58.82974 * 19 18 17 31 31 H 1.08994 * 109.52621 * 297.70472 * 20 19 18 32 32 H 1.09002 * 109.57258 * 177.54376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 6 2.6182 0.1776 -2.4734 6 8 1.9209 -0.8139 -2.4292 7 7 2.9447 0.7193 -3.6636 8 6 2.4892 0.1493 -4.8242 9 1 1.8683 -0.7335 -4.7848 10 6 2.8254 0.7080 -6.0512 11 7 3.5804 1.7825 -6.0991 12 14 2.2041 -0.0682 -7.6327 13 1 1.3789 -1.2595 -7.3085 14 1 1.3792 0.9171 -8.3769 15 1 3.3598 -0.4789 -8.4698 16 6 3.1211 -1.4396 -0.0923 17 6 2.6685 -2.2130 1.1514 18 8 3.1524 -1.5545 2.3237 19 6 2.6676 -0.2200 2.4854 20 6 3.1201 0.6332 1.2976 21 1 2.7562 1.8293 -1.1292 22 1 4.2093 0.8040 -1.1963 23 1 3.5026 1.5119 -3.6989 24 1 3.8154 2.1723 -6.9557 25 1 2.7161 -1.9141 -0.9862 26 1 4.2098 -1.4360 -0.1423 27 1 3.0668 -3.2269 1.1133 28 1 1.5794 -2.2511 1.1791 29 1 3.0652 0.2018 3.4084 30 1 1.5786 -0.2316 2.5306 31 1 4.2089 0.6788 1.2757 32 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118748779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -89.770966 kcal Electronic energy + Delta-G solvation = -17080.501373 eV Core-core repulsion = 14232.865738 eV Total energy + Delta-G solvation = -2847.635635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38638 -39.66933 -37.45320 -36.06943 -35.22359 -33.29383 -32.05536 -30.16669 -27.01662 -24.88145 -24.57732 -22.72762 -21.07780 -19.92826 -18.08399 -17.57808 -16.91270 -16.88178 -16.50422 -16.06427 -15.63769 -15.55921 -15.33321 -14.75300 -14.60429 -13.99555 -13.55168 -13.40914 -13.10892 -13.01791 -12.92636 -12.72188 -12.60064 -12.40845 -12.23883 -12.12440 -11.66937 -11.44065 -11.30881 -10.58124 -10.13847 -9.96824 -8.47640 -5.95059 1.34507 1.40632 1.53510 1.79717 1.87404 2.06117 2.28544 2.89869 2.96475 3.17199 3.21812 3.70449 3.79996 3.88178 4.05047 4.26856 4.40896 4.48603 4.58844 4.72277 4.76399 4.85078 4.86674 4.95139 5.11472 5.20226 5.34178 5.43650 5.99834 6.23825 6.59672 6.65188 7.13096 7.57147 8.12761 8.69688 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046257 B = 0.005796 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.172637 B = 4829.982957 C = 4910.889608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.248 3.752 3 C 0.056 3.944 4 C -0.115 4.115 5 C 0.433 3.567 6 O -0.622 6.622 7 N -0.571 5.571 8 C -0.331 4.331 9 H 0.076 0.924 10 C -0.010 4.010 11 N -0.917 5.917 12 Si 0.987 3.013 13 H -0.277 1.277 14 H -0.274 1.274 15 H -0.268 1.268 16 C -0.151 4.151 17 C 0.064 3.936 18 O -0.386 6.386 19 C 0.052 3.948 20 C -0.136 4.136 21 H 0.109 0.891 22 H 0.141 0.859 23 H 0.398 0.602 24 H 0.277 0.723 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.024 0.976 29 H 0.132 0.868 30 H 0.029 0.971 31 H 0.126 0.874 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 0.132 13.697 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.068 4.068 3 C 0.052 3.948 4 C -0.156 4.156 5 C 0.221 3.779 6 O -0.509 6.509 7 N -0.207 5.207 8 C -0.461 4.461 9 H 0.094 0.906 10 C -0.210 4.210 11 N -0.558 5.558 12 Si 0.811 3.189 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.193 1.193 16 C -0.189 4.189 17 C -0.013 4.013 18 O -0.305 6.305 19 C -0.024 4.024 20 C -0.174 4.174 21 H 0.127 0.873 22 H 0.159 0.841 23 H 0.232 0.768 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.043 0.957 29 H 0.149 0.851 30 H 0.047 0.953 31 H 0.144 0.856 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.858 -0.487 13.684 14.225 hybrid contribution -0.267 0.143 -1.528 1.558 sum 3.591 -0.345 12.155 12.679 Atomic orbital electron populations 1.81064 1.14761 1.10328 1.11376 1.29466 0.95511 0.91389 0.90476 1.18373 0.79878 0.98735 0.97815 1.21711 1.04937 1.00201 0.88719 1.20963 0.84511 0.86391 0.86051 1.90478 1.43470 1.29480 1.87494 1.41942 1.46290 1.27740 1.04724 1.19644 1.30372 1.11462 0.84584 0.90616 1.25943 0.96732 0.96523 1.01848 1.69656 1.36888 1.21335 1.27961 0.84961 0.78247 0.78022 0.77664 1.20196 1.19944 1.19306 1.22527 1.03471 0.92974 0.99952 1.22626 0.97066 0.97384 0.84246 1.87907 1.71582 1.27751 1.43239 1.22814 0.97623 0.82281 0.99731 1.22399 1.04892 1.00163 0.89943 0.87326 0.84090 0.76753 0.91312 0.90179 0.87199 0.86772 0.95734 0.85057 0.95285 0.85560 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.90 18.54 20.01 0.37 -20.53 16 2 C 0.25 8.88 9.91 89.44 0.89 9.77 16 3 C 0.06 1.49 0.49 -53.87 -0.03 1.47 16 4 C -0.11 -3.21 4.75 29.85 0.14 -3.07 16 5 C 0.43 18.76 7.22 87.66 0.63 19.39 16 6 O -0.62 -31.71 12.09 -3.07 -0.04 -31.74 16 7 N -0.57 -27.69 5.29 -306.98 -1.62 -29.31 16 8 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 9 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 10 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 11 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 12 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 16 C -0.15 -4.12 4.58 30.75 0.14 -3.98 16 17 C 0.06 1.60 6.62 72.08 0.48 2.07 16 18 O -0.39 -8.87 10.77 -148.98 -1.60 -10.48 16 19 C 0.05 0.96 6.61 72.01 0.48 1.44 16 20 C -0.14 -2.28 4.90 30.68 0.15 -2.13 16 21 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 22 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.40 18.16 7.90 -92.71 -0.73 17.43 16 24 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 25 H 0.08 2.90 5.62 -2.39 -0.01 2.88 16 26 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.02 0.72 7.38 -2.39 -0.02 0.70 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 0.65 7.38 -2.39 -0.02 0.63 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.96 271.60 3.99 -66.97 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.41 Total: 21.07 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.16 Total: 7.35 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -0.97 Total: -97.93 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.64 Total: -42.22 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -70.96 3.99 -66.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118748779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.804 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds