Wall clock time and date at job start Sun Mar 29 2020 22:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99757 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00476 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00323 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 119.99997 * 17 15 13 20 20 H 1.48506 * 109.46902 * 240.00248 * 17 15 13 21 21 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 22 22 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 23 23 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 24 24 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 25 25 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 32 32 H 0.96996 * 120.00458 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 7 3.3833 -7.2607 0.0208 13 6 4.3382 -8.2422 0.0267 14 1 5.3851 -7.9771 0.0266 15 6 3.9605 -9.5780 0.0337 16 7 2.6847 -9.9012 0.0353 17 14 5.2632 -10.9168 0.0425 18 1 6.6118 -10.2953 0.0397 19 1 5.1054 -11.7530 1.2595 20 1 5.1078 -11.7665 -1.1655 21 1 -0.3634 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.9896 2.1010 -0.0004 25 1 4.5701 -1.2610 0.0131 26 1 3.8714 -3.3199 0.0019 27 1 1.9378 -5.1733 0.8978 28 1 1.9406 -5.1820 -0.8822 29 1 4.3765 -5.6455 -0.8762 30 1 4.3738 -5.6369 0.9038 31 1 2.4430 -7.4990 0.0212 32 1 2.4208 -10.8345 0.0399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132482882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:30 Heat of formation + Delta-G solvation = -16.293931 kcal Electronic energy + Delta-G solvation = -15937.662295 eV Core-core repulsion = 13093.212863 eV Total energy + Delta-G solvation = -2844.449432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.73530 -39.26745 -35.71185 -33.96501 -33.88565 -31.56243 -30.53084 -27.66129 -27.36160 -24.23032 -22.91528 -21.54777 -20.60966 -20.01603 -18.14466 -17.21508 -16.39908 -16.01643 -15.48825 -15.19468 -14.80670 -14.56652 -13.69798 -13.53716 -13.43667 -13.16002 -13.15370 -12.83792 -12.64146 -11.66198 -11.46759 -11.12642 -10.83788 -10.82525 -10.10691 -9.95054 -9.74361 -9.69065 -9.00841 -8.90629 -8.81015 -7.00787 -5.80760 -3.11650 1.20623 1.86899 2.72778 3.23145 3.39050 3.41498 3.46930 3.49314 4.33214 4.47821 4.57427 4.87095 5.11839 5.25341 5.48096 5.49058 5.59663 5.72150 5.75179 5.76694 5.86938 5.95095 6.13203 6.31734 6.46698 6.68440 6.72146 6.76114 7.60152 7.65282 8.31204 8.36875 9.48139 10.02742 10.37453 11.41871 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058826 B = 0.003818 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.863231 B = 7332.131837 C = 7782.228010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.132 4.132 3 C -0.051 4.051 4 O -0.174 6.174 5 C 0.019 3.981 6 C -0.229 4.229 7 C 0.582 3.418 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.112 3.888 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.207 0.793 25 H 0.212 0.788 26 H 0.396 0.604 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 22.329 -0.080 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.116 4.116 4 O -0.069 6.069 5 C -0.051 4.051 6 C -0.234 4.234 7 C 0.369 3.631 8 O -0.412 6.412 9 N -0.371 5.371 10 C -0.011 4.011 11 C 0.016 3.984 12 N -0.375 5.375 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.223 0.777 25 H 0.229 0.771 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.452 22.191 -0.083 22.195 hybrid contribution 0.777 -0.909 0.022 1.196 sum 1.229 21.281 -0.062 21.317 Atomic orbital electron populations 1.20247 0.88330 1.03230 1.02622 1.21450 0.97354 0.90411 1.04169 1.23693 0.79720 0.99651 1.08580 1.83775 1.29638 1.22380 1.71067 1.24457 0.98893 0.81091 1.00673 1.21512 0.93366 0.94456 1.14039 1.17239 0.85686 0.83600 0.76575 1.90774 1.17310 1.83261 1.49859 1.45783 1.09202 1.06840 1.75272 1.21599 0.98670 0.78109 1.02748 1.20759 0.93250 0.85943 0.98418 1.42196 1.06992 0.98603 1.89690 1.19237 0.88756 0.86151 1.43398 0.90963 1.24786 0.96185 0.97217 1.02637 1.69674 1.13923 1.17006 1.57208 0.86078 0.80522 0.82067 0.77247 1.20499 1.21756 1.21760 0.91172 0.91809 0.89788 0.77691 0.77149 0.77006 0.91114 0.91106 0.95769 0.95786 0.77972 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.00 36.01 0.36 -0.56 16 2 C -0.13 -1.49 6.37 -102.50 -0.65 -2.15 16 3 C -0.05 -0.44 11.96 29.30 0.35 -0.09 16 4 O -0.17 -1.63 10.52 7.64 0.08 -1.55 16 5 C 0.02 0.18 11.61 30.07 0.35 0.53 16 6 C -0.23 -2.84 6.31 -103.28 -0.65 -3.49 16 7 C 0.58 8.93 7.81 -12.54 -0.10 8.83 16 8 O -0.53 -10.15 15.41 5.27 0.08 -10.07 16 9 N -0.72 -10.03 5.55 -61.39 -0.34 -10.37 16 10 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 11 C 0.14 2.81 6.37 -4.04 -0.03 2.78 16 12 N -0.73 -18.55 5.60 -59.91 -0.34 -18.89 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 17 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 1.08 6.91 -51.93 -0.36 0.72 16 24 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 25 H 0.21 1.12 7.47 -52.49 -0.39 0.73 16 26 H 0.40 4.16 7.44 -40.82 -0.30 3.86 16 27 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -34.30 285.29 -5.03 -39.33 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.87 Total: 7.20 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.64 Total: 0.36 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.05 Total: -56.79 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.16 Total: -11.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.30 -5.03 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132482882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.034 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds