Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99757 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00476 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00323 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 119.99997 * 17 15 13 20 20 H 1.48506 * 109.46902 * 240.00248 * 17 15 13 21 21 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 22 22 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 23 23 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 24 24 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 25 25 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 32 32 H 0.96996 * 120.00458 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 7 3.3833 -7.2607 0.0208 13 6 4.3382 -8.2422 0.0267 14 1 5.3851 -7.9771 0.0266 15 6 3.9605 -9.5780 0.0337 16 7 2.6847 -9.9012 0.0353 17 14 5.2632 -10.9168 0.0425 18 1 6.6118 -10.2953 0.0397 19 1 5.1054 -11.7530 1.2595 20 1 5.1078 -11.7665 -1.1655 21 1 -0.3634 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.9896 2.1010 -0.0004 25 1 4.5701 -1.2610 0.0131 26 1 3.8714 -3.3199 0.0019 27 1 1.9378 -5.1733 0.8978 28 1 1.9406 -5.1820 -0.8822 29 1 4.3765 -5.6455 -0.8762 30 1 4.3738 -5.6369 0.9038 31 1 2.4430 -7.4990 0.0212 32 1 2.4208 -10.8345 0.0399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132482882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = -42.291907 kcal Electronic energy + Delta-G solvation = -15938.789652 eV Core-core repulsion = 13093.212863 eV Total energy + Delta-G solvation = -2845.576789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49443 -40.50515 -37.33285 -35.55664 -34.77641 -33.28487 -31.67951 -29.25889 -28.13369 -25.89648 -24.28842 -23.07957 -21.39304 -21.09574 -19.38586 -18.92450 -17.20032 -17.16680 -16.67516 -16.52468 -16.47209 -15.70371 -15.16972 -15.10566 -14.95501 -14.31876 -14.24004 -13.97836 -13.41912 -13.12552 -13.04954 -12.70382 -12.54345 -12.41867 -12.04521 -11.86002 -11.15340 -11.00896 -10.61993 -10.15483 -9.59683 -9.07212 -7.97099 -5.28756 0.36223 1.08823 1.49015 1.50464 1.60567 1.96403 2.13826 2.29622 2.58023 3.37518 3.60309 3.67526 3.96188 4.05299 4.19947 4.20308 4.36270 4.51987 4.57364 4.79697 4.93934 4.99090 5.06491 5.08211 5.12067 5.32899 5.49088 5.52265 6.00596 6.23656 6.50940 7.17141 7.29878 8.01452 8.24289 9.26885 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058826 B = 0.003818 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.863231 B = 7332.131837 C = 7782.228010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.168 4.168 3 C -0.029 4.029 4 O -0.172 6.172 5 C 0.049 3.951 6 C -0.270 4.270 7 C 0.580 3.420 8 O -0.583 6.583 9 N -0.706 5.706 10 C 0.129 3.871 11 C 0.149 3.851 12 N -0.748 5.748 13 C -0.247 4.247 14 H 0.085 0.915 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.294 1.294 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.246 0.754 25 H 0.250 0.750 26 H 0.416 0.584 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.373 0.627 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 24.355 -0.079 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.170 4.170 3 C -0.095 4.095 4 O -0.066 6.066 5 C -0.021 4.021 6 C -0.275 4.275 7 C 0.370 3.630 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.005 3.995 11 C 0.023 3.977 12 N -0.392 5.392 13 C -0.379 4.379 14 H 0.103 0.897 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.221 1.221 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.262 0.738 25 H 0.266 0.734 26 H 0.253 0.747 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.989 24.282 -0.083 24.466 hybrid contribution 0.034 -1.402 0.020 1.402 sum 3.023 22.881 -0.062 23.079 Atomic orbital electron populations 1.20181 0.88573 1.02916 1.02387 1.21697 0.97805 0.91103 1.06427 1.24336 0.78786 1.00574 1.05760 1.83834 1.29967 1.22294 1.70495 1.25080 0.98860 0.81107 0.97075 1.21401 0.95425 0.92882 1.17802 1.17726 0.85047 0.84959 0.75310 1.90749 1.19347 1.84143 1.52142 1.45525 1.10247 1.05144 1.74916 1.21163 0.97403 0.79825 1.01152 1.20854 0.94109 0.83300 0.99477 1.42446 1.06129 1.00805 1.89788 1.19703 0.89704 0.86879 1.41603 0.89721 1.25685 0.98205 0.99737 1.03345 1.69843 1.16087 1.17047 1.59210 0.84986 0.78754 0.78872 0.76577 1.18466 1.22094 1.22099 0.91439 0.89013 0.93129 0.73784 0.73375 0.74691 0.92855 0.92842 0.94182 0.94198 0.79495 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.00 71.24 0.71 -1.05 16 2 C -0.17 -3.60 6.37 -18.49 -0.12 -3.71 16 3 C -0.03 -0.41 11.96 66.89 0.80 0.39 16 4 O -0.17 -2.58 10.52 4.41 0.05 -2.53 16 5 C 0.05 0.75 11.61 67.39 0.78 1.53 16 6 C -0.27 -6.37 6.31 -18.99 -0.12 -6.49 16 7 C 0.58 17.89 7.81 86.65 0.68 18.56 16 8 O -0.58 -23.24 15.41 -4.07 -0.06 -23.30 16 9 N -0.71 -19.04 5.55 -466.40 -2.59 -21.62 16 10 C 0.13 4.50 5.79 86.38 0.50 5.00 16 11 C 0.15 5.64 6.37 86.38 0.55 6.19 16 12 N -0.75 -38.10 5.60 -343.45 -1.92 -40.02 16 13 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 16 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 17 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.05 1.39 6.91 -2.39 -0.02 1.37 16 24 H 0.25 1.24 8.06 -2.91 -0.02 1.22 16 25 H 0.25 1.48 7.47 -2.91 -0.02 1.45 16 26 H 0.42 7.68 7.44 -92.71 -0.69 6.99 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.37 20.66 7.67 -92.71 -0.71 19.95 16 32 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.02 285.29 2.62 -73.40 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.25 Total: 22.64 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.09 Total: 3.64 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -4.23 Total: -121.48 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.02 Total: -25.83 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.02 2.62 -73.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132482882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.111 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds