Wall clock time and date at job start Sun Mar 29 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.36936 * 119.99757 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00476 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00121 * 16 14 12 18 18 H 1.48506 * 109.46994 * 210.00426 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99871 * 16 14 12 20 20 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 21 21 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 22 22 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 23 23 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 24 24 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 29 29 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 30 30 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 31 31 H 0.96996 * 120.00458 * 179.97438 * 15 14 12 32 32 H 1.07999 * 126.64240 * 179.78042 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 7 9.7071 -1.6542 0.0134 12 6 10.9407 -1.0598 0.0189 13 1 11.0212 0.0171 0.0196 14 6 12.0878 -1.8416 0.0245 15 7 11.9897 -3.1541 0.0250 16 14 13.7706 -1.0308 0.0326 17 1 14.2098 -0.8159 1.4348 18 1 14.7462 -1.9082 -0.6628 19 1 13.6936 0.2764 -0.6679 20 6 2.3408 -1.1291 -0.0066 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9769 2.1146 0.0004 25 1 6.1245 0.0584 -0.0014 26 1 7.2697 -2.3638 0.8916 27 1 7.2775 -2.3625 -0.8884 28 1 8.4895 -0.1993 -0.8815 29 1 8.4818 -0.2006 0.8985 30 1 9.6348 -2.6215 0.0131 31 1 12.7912 -3.7003 0.0286 32 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132641191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:31 Heat of formation + Delta-G solvation = -15.793997 kcal Electronic energy + Delta-G solvation = -15795.671203 eV Core-core repulsion = 12951.243450 eV Total energy + Delta-G solvation = -2844.427753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.88803 -39.36064 -35.78889 -34.52433 -33.81268 -31.40429 -30.64754 -28.17081 -27.19631 -24.21548 -22.77259 -21.48617 -21.29843 -19.88151 -18.10554 -17.22384 -16.57372 -16.43332 -15.64561 -15.17597 -14.57227 -14.07157 -13.77411 -13.72219 -13.44617 -13.25542 -13.17439 -12.94893 -12.79205 -11.99117 -11.49614 -11.12733 -10.85301 -10.81504 -10.32555 -10.09490 -9.93317 -9.76565 -9.11320 -8.91891 -8.71700 -7.00314 -5.79993 -3.10891 0.92675 2.08837 2.53772 3.15879 3.22082 3.42498 3.47467 3.49387 4.48181 4.52021 4.59151 4.70533 5.08517 5.29553 5.37711 5.48349 5.49322 5.52905 5.68046 5.73927 5.74385 5.93083 6.10337 6.16448 6.39222 6.59458 6.68222 6.73545 7.50569 7.65821 8.10600 8.37510 9.48887 10.03115 10.38051 11.42624 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.073934 B = 0.003570 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.626541 B = 7841.695138 C = 8194.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.013 4.013 4 O -0.161 6.161 5 C -0.068 4.068 6 C 0.598 3.402 7 O -0.521 6.521 8 N -0.710 5.710 9 C 0.109 3.891 10 C 0.144 3.856 11 N -0.729 5.729 12 C -0.245 4.245 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.911 3.089 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C -0.123 4.123 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.208 0.792 25 H 0.405 0.595 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 8.979 -0.089 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.197 4.197 3 C -0.083 4.083 4 O -0.056 6.056 5 C -0.121 4.121 6 C 0.383 3.617 7 O -0.399 6.399 8 N -0.360 5.360 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.143 4.143 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.240 0.760 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.736 8.389 -0.098 23.299 hybrid contribution 0.800 0.545 0.015 0.968 sum -20.936 8.933 -0.083 22.762 Atomic orbital electron populations 1.20176 0.88658 1.02831 1.02306 1.20491 0.97701 0.92459 1.09039 1.24183 0.79992 1.00010 1.04081 1.84070 1.29304 1.21771 1.70505 1.22182 0.96304 0.80458 1.13112 1.16544 0.81274 0.86395 0.77486 1.90896 1.85937 1.12218 1.50837 1.45853 1.05547 1.11076 1.73557 1.21688 0.82591 0.94138 1.02985 1.20759 0.85677 0.93347 0.98610 1.42182 0.99988 1.05557 1.89739 1.19194 0.83276 0.91605 1.43470 0.90997 1.24784 0.97976 0.95430 1.02634 1.69663 1.28119 1.02929 1.57173 0.86142 0.84028 0.78139 0.77558 1.21611 1.21673 1.20689 1.21843 0.90551 1.00596 1.01339 0.91284 0.91272 0.91488 0.77511 0.76038 0.90810 0.90800 0.95637 0.95655 0.77963 0.93333 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 36.01 0.37 -0.13 16 2 C -0.20 -1.79 6.14 -104.93 -0.64 -2.44 16 3 C -0.01 -0.11 12.00 29.63 0.36 0.25 16 4 O -0.16 -1.81 10.40 5.01 0.05 -1.76 16 5 C -0.07 -0.90 7.13 -36.79 -0.26 -1.16 16 6 C 0.60 9.37 7.79 -12.86 -0.10 9.27 16 7 O -0.52 -9.83 16.86 5.20 0.09 -9.74 16 8 N -0.71 -10.49 5.55 -61.62 -0.34 -10.83 16 9 C 0.11 1.91 5.79 -4.04 -0.02 1.88 16 10 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16 11 N -0.73 -18.66 5.60 -59.91 -0.34 -19.00 16 12 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 15 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 16 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.12 -1.43 10.57 -39.39 -0.42 -1.85 16 21 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.21 0.87 8.06 -52.48 -0.42 0.44 16 25 H 0.41 5.04 8.23 -40.82 -0.34 4.70 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.39 10.42 7.67 -40.82 -0.31 10.10 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -33.18 289.16 -5.47 -38.65 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.00 Total: 7.42 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.99 Total: 1.20 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.05 Total: -57.47 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.14 Total: -11.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.18 -5.47 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132641191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.852 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds