Wall clock time and date at job start Sun Mar 29 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.36936 * 119.99757 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00476 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00121 * 16 14 12 18 18 H 1.48506 * 109.46994 * 210.00426 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99871 * 16 14 12 20 20 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 21 21 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 22 22 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 23 23 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 24 24 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 29 29 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 30 30 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 31 31 H 0.96996 * 120.00458 * 179.97438 * 15 14 12 32 32 H 1.07999 * 126.64240 * 179.78042 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 7 9.7071 -1.6542 0.0134 12 6 10.9407 -1.0598 0.0189 13 1 11.0212 0.0171 0.0196 14 6 12.0878 -1.8416 0.0245 15 7 11.9897 -3.1541 0.0250 16 14 13.7706 -1.0308 0.0326 17 1 14.2098 -0.8159 1.4348 18 1 14.7462 -1.9082 -0.6628 19 1 13.6936 0.2764 -0.6679 20 6 2.3408 -1.1291 -0.0066 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9769 2.1146 0.0004 25 1 6.1245 0.0584 -0.0014 26 1 7.2697 -2.3638 0.8916 27 1 7.2775 -2.3625 -0.8884 28 1 8.4895 -0.1993 -0.8815 29 1 8.4818 -0.2006 0.8985 30 1 9.6348 -2.6215 0.0131 31 1 12.7912 -3.7003 0.0286 32 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132641191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:31 Heat of formation + Delta-G solvation = -40.416048 kcal Electronic energy + Delta-G solvation = -15796.738895 eV Core-core repulsion = 12951.243450 eV Total energy + Delta-G solvation = -2845.495446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.71248 -40.63409 -37.41051 -35.70773 -35.08143 -33.23990 -31.68629 -29.60450 -28.03955 -25.89881 -24.19584 -23.03730 -22.16693 -20.95663 -19.41469 -18.89634 -17.50000 -17.43168 -16.96864 -16.51478 -16.50005 -15.48848 -15.13463 -15.09627 -14.78185 -14.36597 -14.08913 -13.93661 -13.51314 -13.15659 -13.06220 -12.69266 -12.59564 -12.52025 -12.09816 -11.90378 -11.54440 -11.00899 -10.75552 -10.35593 -9.56079 -9.08503 -7.97789 -5.29602 -0.01761 1.33009 1.48130 1.50896 1.58464 1.60829 2.02725 2.10896 2.57237 3.36439 3.61427 3.81581 3.93900 4.04123 4.13771 4.16944 4.33889 4.53353 4.65747 4.89787 4.91300 4.93901 5.04129 5.08531 5.09462 5.21068 5.47517 5.51527 5.81679 6.22845 6.35732 6.91487 7.29289 8.00021 8.23681 9.25924 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.073934 B = 0.003570 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.626541 B = 7841.695138 C = 8194.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.208 4.208 3 C 0.009 3.991 4 O -0.167 6.167 5 C -0.102 4.102 6 C 0.598 3.402 7 O -0.564 6.564 8 N -0.700 5.700 9 C 0.126 3.874 10 C 0.149 3.851 11 N -0.747 5.747 12 C -0.250 4.250 13 H 0.083 0.917 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.980 3.020 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.266 1.266 20 C -0.122 4.122 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.255 0.745 25 H 0.418 0.582 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.375 0.625 31 H 0.253 0.747 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.498 11.660 -0.089 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.060 4.060 4 O -0.063 6.063 5 C -0.154 4.154 6 C 0.386 3.614 7 O -0.445 6.445 8 N -0.351 5.351 9 C 0.002 3.998 10 C 0.022 3.978 11 N -0.390 5.390 12 C -0.381 4.381 13 H 0.101 0.899 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.808 3.192 17 H -0.212 1.212 18 H -0.222 1.222 19 H -0.190 1.190 20 C -0.143 4.143 21 H 0.096 0.904 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.271 0.729 25 H 0.255 0.745 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.207 0.793 31 H 0.062 0.938 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.137 11.140 -0.098 25.680 hybrid contribution 1.044 -0.193 0.016 1.062 sum -22.093 10.947 -0.083 24.656 Atomic orbital electron populations 1.20261 0.86377 1.03945 1.03198 1.20865 0.99275 0.91553 1.09195 1.25178 0.78596 1.01784 1.00471 1.84057 1.30938 1.20550 1.70712 1.21615 0.95352 0.81406 1.17010 1.16834 0.81979 0.86229 0.76359 1.90862 1.86667 1.14095 1.52852 1.45641 1.04588 1.11458 1.73436 1.21288 0.82955 0.93717 1.01871 1.20833 0.84458 0.93117 0.99380 1.42408 1.01230 1.05566 1.89819 1.19651 0.84336 0.92234 1.41903 0.89908 1.25685 1.01935 0.96013 1.03234 1.69831 1.28770 1.04447 1.59041 0.85046 0.79035 0.77551 0.77519 1.21235 1.22229 1.19030 1.22108 0.90750 1.01530 0.99926 0.90441 0.91353 0.89265 0.72905 0.74490 0.92037 0.92016 0.94402 0.94418 0.79329 0.93833 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C -0.21 -3.27 6.14 -20.06 -0.12 -3.39 16 3 C 0.01 0.12 12.00 67.10 0.81 0.92 16 4 O -0.17 -3.41 10.40 -4.97 -0.05 -3.46 16 5 C -0.10 -2.63 7.13 24.07 0.17 -2.46 16 6 C 0.60 19.06 7.79 86.44 0.67 19.73 16 7 O -0.56 -22.09 16.86 -4.33 -0.07 -22.17 16 8 N -0.70 -20.59 5.55 -467.09 -2.59 -23.18 16 9 C 0.13 4.46 5.79 86.38 0.50 4.96 16 10 C 0.15 5.82 6.37 86.38 0.55 6.37 16 11 N -0.75 -38.43 5.60 -343.45 -1.92 -40.36 16 12 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 13 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 14 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 15 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 16 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.12 -2.77 10.57 22.39 0.24 -2.53 16 21 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 22 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.26 0.73 8.06 -2.91 -0.02 0.71 16 25 H 0.42 9.96 8.23 -92.71 -0.76 9.20 16 26 H 0.06 2.33 8.14 -2.38 -0.02 2.32 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.37 20.75 7.67 -92.71 -0.71 20.03 16 31 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -72.19 289.16 2.20 -69.99 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.33 Total: 24.55 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.86 Total: 6.57 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -4.23 Total: -123.44 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.12 Total: -25.63 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.19 2.20 -69.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132641191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds