Wall clock time and date at job start Sun Mar 29 2020 21:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47188 * 306.40454 * 3 2 1 5 5 C 1.37097 * 119.99927 * 264.28669 * 4 3 2 6 6 H 1.08007 * 119.99507 * 197.47571 * 5 4 3 7 7 C 1.38942 * 120.00243 * 17.47891 * 5 4 3 8 8 N 1.31407 * 120.00333 * 21.14231 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 201.15082 * 7 5 4 10 10 H 1.48496 * 109.47648 * 89.99614 * 9 7 5 11 11 H 1.48505 * 109.47224 * 209.99869 * 9 7 5 12 12 H 1.48508 * 109.47163 * 329.99376 * 9 7 5 13 13 C 1.34778 * 119.99898 * 84.28443 * 4 3 2 14 14 O 1.21288 * 119.99884 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99874 * 359.72591 * 13 4 3 16 16 C 1.52996 * 109.46763 * 180.27543 * 15 13 4 17 17 O 1.42900 * 112.85375 * 53.80463 * 16 15 13 18 18 C 1.53782 * 113.61447 * 282.49457 * 16 15 13 19 19 C 1.53784 * 87.08005 * 220.02294 * 18 16 15 20 20 C 1.53774 * 87.08307 * 25.43285 * 19 18 16 21 21 H 1.09005 * 109.46786 * 186.40857 * 3 2 1 22 22 H 1.08998 * 109.47481 * 66.40740 * 3 2 1 23 23 H 0.96995 * 120.00484 * 180.02562 * 8 7 5 24 24 H 1.08994 * 109.46909 * 300.27289 * 15 13 4 25 25 H 1.08992 * 109.46960 * 60.27635 * 15 13 4 26 26 H 0.96701 * 114.00048 * 309.66764 * 17 16 15 27 27 H 1.08995 * 113.61207 * 334.57132 * 18 16 15 28 28 H 1.09002 * 113.61096 * 105.47575 * 18 16 15 29 29 H 1.09005 * 113.61028 * 270.88298 * 19 18 16 30 30 H 1.09003 * 113.68727 * 139.99357 * 19 18 16 31 31 H 1.08993 * 113.61662 * 220.02069 * 20 19 18 32 32 H 1.09003 * 113.61899 * 89.11374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8189 1.1117 5 6 3.4364 -0.2280 2.3012 6 1 4.0498 -0.7607 3.0130 7 6 2.9916 1.0559 2.5912 8 7 1.9440 1.5451 1.9668 9 14 3.8830 2.0869 3.8687 10 1 4.9547 2.8750 3.2089 11 1 2.9192 3.0101 4.5200 12 1 4.4836 1.1952 4.8932 13 6 3.2124 -2.1536 0.9649 14 8 3.6165 -2.8321 1.8854 15 6 2.8331 -2.8038 -0.3407 16 6 3.0507 -4.3148 -0.2401 17 8 2.3800 -4.8989 0.8784 18 6 4.5249 -4.7345 -0.3646 19 6 4.0340 -5.9209 -1.2109 20 6 2.8082 -5.0616 -1.5624 21 1 2.9709 1.0221 0.1147 22 1 2.9716 -0.4105 -0.9417 23 1 1.6337 2.4416 2.1689 24 1 1.7840 -2.6014 -0.5560 25 1 3.4528 -2.3999 -1.1412 26 1 2.5474 -4.4474 1.7171 27 1 5.1356 -4.0239 -0.9216 28 1 4.9760 -5.0307 0.5825 29 1 3.7924 -6.8064 -0.6228 30 1 4.6720 -6.1422 -2.0666 31 1 1.8734 -5.6217 -1.5824 32 1 2.9495 -4.4403 -2.4469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143315622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:41 Heat of formation + Delta-G solvation = -28.132153 kcal Electronic energy + Delta-G solvation = -17325.500186 eV Core-core repulsion = 14480.537410 eV Total energy + Delta-G solvation = -2844.962776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83376 -38.16829 -35.83878 -34.46521 -33.86835 -32.03047 -29.72783 -27.49545 -25.46652 -24.98157 -22.83015 -19.41263 -19.21251 -17.99373 -16.58497 -16.40734 -15.86021 -15.02058 -14.85674 -14.39543 -14.19669 -14.03137 -13.21285 -13.04583 -12.55195 -12.36822 -11.96818 -11.90639 -11.65325 -11.32800 -11.25043 -11.10184 -10.89634 -10.61304 -10.60076 -10.45624 -10.39463 -9.98691 -9.34896 -9.20227 -8.64504 -8.14244 -6.57943 -4.08021 3.04472 3.18193 3.22144 3.45838 3.71650 3.92760 4.06000 4.46972 4.66064 4.81709 4.86742 5.02319 5.14137 5.17407 5.20885 5.64085 5.67275 5.82248 5.89962 5.94054 6.03194 6.09919 6.13151 6.39308 6.43418 6.56896 6.64485 7.40139 7.80129 8.14762 8.34341 8.68755 8.92932 9.11292 9.63444 10.47904 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.007665 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.882005 B = 3651.990620 C = 4182.074108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.244 3.756 3 C 0.220 3.780 4 N -0.438 5.438 5 C -0.317 4.317 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.457 3.543 14 O -0.578 6.578 15 C -0.159 4.159 16 C 0.136 3.864 17 O -0.556 6.556 18 C -0.158 4.158 19 C -0.136 4.136 20 C -0.131 4.131 21 H 0.128 0.872 22 H 0.084 0.916 23 H 0.274 0.726 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.394 0.606 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -4.783 -7.773 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.074 4.074 3 C 0.093 3.907 4 N -0.157 5.157 5 C -0.444 4.444 6 H 0.128 0.872 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.246 3.754 14 O -0.463 6.463 15 C -0.199 4.199 16 C 0.094 3.906 17 O -0.369 6.369 18 C -0.195 4.195 19 C -0.173 4.173 20 C -0.169 4.169 21 H 0.146 0.854 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.250 0.750 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.541 -5.306 -7.719 10.014 hybrid contribution 0.801 1.300 1.073 1.867 sum 4.342 -4.005 -6.646 8.892 Atomic orbital electron populations 1.80907 1.13571 1.10180 1.10298 1.29260 0.95330 0.91605 0.91203 1.18759 0.81689 1.00415 0.89871 1.43657 1.55819 1.04312 1.11923 1.19764 1.30415 0.98141 0.96079 0.87201 1.25300 0.94922 0.98190 0.98717 1.69857 1.20001 1.18086 1.43466 0.85877 0.78988 0.79385 0.80244 1.20094 1.21058 1.19288 1.20107 0.83636 0.82147 0.89485 1.90367 1.51251 1.61572 1.43120 1.22262 1.03161 0.96526 0.97973 1.21642 0.92048 0.89180 0.87725 1.86219 1.72305 1.58868 1.19533 1.23524 0.97420 0.97808 1.00797 1.22744 0.97356 0.97595 0.99598 1.23072 0.99242 0.98688 0.95861 0.85387 0.89803 0.91506 0.89657 0.89089 0.74970 0.89998 0.90724 0.90178 0.91865 0.90940 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.08 18.54 42.15 0.78 -10.30 16 2 C 0.24 5.30 12.95 -20.76 -0.27 5.04 16 3 C 0.22 4.22 4.91 -6.83 -0.03 4.18 16 4 N -0.44 -9.83 2.60 -117.93 -0.31 -10.14 16 5 C -0.32 -7.91 9.33 -14.94 -0.14 -8.05 16 6 H 0.11 2.89 7.38 -52.48 -0.39 2.51 16 7 C 0.03 0.79 4.88 -17.47 -0.09 0.70 16 8 N -0.88 -21.66 9.45 55.49 0.52 -21.13 16 9 Si 0.93 19.22 29.60 -169.99 -5.03 14.19 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 13 C 0.46 9.81 7.33 -10.98 -0.08 9.73 16 14 O -0.58 -13.87 13.24 -14.27 -0.19 -14.06 16 15 C -0.16 -2.69 3.95 -27.88 -0.11 -2.80 16 16 C 0.14 2.26 1.10 -89.81 -0.10 2.16 16 17 O -0.56 -10.79 13.39 -55.05 -0.74 -11.53 16 18 C -0.16 -2.35 7.17 -25.92 -0.19 -2.53 16 19 C -0.14 -1.73 8.02 -25.92 -0.21 -1.94 16 20 C -0.13 -1.75 7.47 -25.92 -0.19 -1.94 16 21 H 0.13 2.51 6.44 -51.93 -0.33 2.18 16 22 H 0.08 1.20 6.69 -51.93 -0.35 0.86 16 23 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 25 H 0.09 1.25 7.33 -51.93 -0.38 0.86 16 26 H 0.39 8.14 6.19 45.56 0.28 8.42 16 27 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -29.13 273.77 -5.46 -34.59 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.22 Total: 9.70 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.40 Total: 4.54 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 1.00 Total: -41.56 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.93 Total: -25.59 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.13 -5.46 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.455 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds