Wall clock time and date at job start Sun Mar 29 2020 21:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47188 * 306.40454 * 3 2 1 5 5 C 1.37097 * 119.99927 * 264.28669 * 4 3 2 6 6 H 1.08007 * 119.99507 * 197.47571 * 5 4 3 7 7 C 1.38942 * 120.00243 * 17.47891 * 5 4 3 8 8 N 1.31407 * 120.00333 * 21.14231 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 201.15082 * 7 5 4 10 10 H 1.48496 * 109.47648 * 89.99614 * 9 7 5 11 11 H 1.48505 * 109.47224 * 209.99869 * 9 7 5 12 12 H 1.48508 * 109.47163 * 329.99376 * 9 7 5 13 13 C 1.34778 * 119.99898 * 84.28443 * 4 3 2 14 14 O 1.21288 * 119.99884 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99874 * 359.72591 * 13 4 3 16 16 C 1.52996 * 109.46763 * 180.27543 * 15 13 4 17 17 O 1.42900 * 112.85375 * 53.80463 * 16 15 13 18 18 C 1.53782 * 113.61447 * 282.49457 * 16 15 13 19 19 C 1.53784 * 87.08005 * 220.02294 * 18 16 15 20 20 C 1.53774 * 87.08307 * 25.43285 * 19 18 16 21 21 H 1.09005 * 109.46786 * 186.40857 * 3 2 1 22 22 H 1.08998 * 109.47481 * 66.40740 * 3 2 1 23 23 H 0.96995 * 120.00484 * 180.02562 * 8 7 5 24 24 H 1.08994 * 109.46909 * 300.27289 * 15 13 4 25 25 H 1.08992 * 109.46960 * 60.27635 * 15 13 4 26 26 H 0.96701 * 114.00048 * 309.66764 * 17 16 15 27 27 H 1.08995 * 113.61207 * 334.57132 * 18 16 15 28 28 H 1.09002 * 113.61096 * 105.47575 * 18 16 15 29 29 H 1.09005 * 113.61028 * 270.88298 * 19 18 16 30 30 H 1.09003 * 113.68727 * 139.99357 * 19 18 16 31 31 H 1.08993 * 113.61662 * 220.02069 * 20 19 18 32 32 H 1.09003 * 113.61899 * 89.11374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8189 1.1117 5 6 3.4364 -0.2280 2.3012 6 1 4.0498 -0.7607 3.0130 7 6 2.9916 1.0559 2.5912 8 7 1.9440 1.5451 1.9668 9 14 3.8830 2.0869 3.8687 10 1 4.9547 2.8750 3.2089 11 1 2.9192 3.0101 4.5200 12 1 4.4836 1.1952 4.8932 13 6 3.2124 -2.1536 0.9649 14 8 3.6165 -2.8321 1.8854 15 6 2.8331 -2.8038 -0.3407 16 6 3.0507 -4.3148 -0.2401 17 8 2.3800 -4.8989 0.8784 18 6 4.5249 -4.7345 -0.3646 19 6 4.0340 -5.9209 -1.2109 20 6 2.8082 -5.0616 -1.5624 21 1 2.9709 1.0221 0.1147 22 1 2.9716 -0.4105 -0.9417 23 1 1.6337 2.4416 2.1689 24 1 1.7840 -2.6014 -0.5560 25 1 3.4528 -2.3999 -1.1412 26 1 2.5474 -4.4474 1.7171 27 1 5.1356 -4.0239 -0.9216 28 1 4.9760 -5.0307 0.5825 29 1 3.7924 -6.8064 -0.6228 30 1 4.6720 -6.1422 -2.0666 31 1 1.8734 -5.6217 -1.5824 32 1 2.9495 -4.4403 -2.4469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143315622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:41 Heat of formation + Delta-G solvation = -46.912012 kcal Electronic energy + Delta-G solvation = -17326.314541 eV Core-core repulsion = 14480.537410 eV Total energy + Delta-G solvation = -2845.777132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27334 -39.63501 -37.55933 -36.20418 -35.28597 -33.83129 -31.16817 -29.13515 -26.73682 -26.51059 -24.13253 -20.97111 -20.47355 -19.75681 -18.22854 -18.02939 -17.19586 -16.65791 -16.21439 -15.91769 -15.67143 -15.52069 -14.75515 -14.63769 -14.07139 -13.77732 -13.61415 -13.32014 -13.21532 -12.98747 -12.90374 -12.48938 -12.32717 -12.15671 -12.09072 -12.00343 -11.67772 -11.22631 -11.10352 -10.49425 -10.32188 -9.94416 -8.41928 -5.97856 1.38542 1.48212 1.57813 1.78728 2.04380 2.24626 2.34844 2.98438 3.06771 3.27588 3.58618 3.71573 3.78846 3.90013 4.00442 4.28601 4.46997 4.57672 4.69690 4.79944 4.88544 4.90390 4.92175 5.12221 5.23198 5.41974 5.48443 5.53594 6.01770 6.36677 6.77904 6.99714 7.12915 7.34802 7.90088 8.61559 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.007665 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.882005 B = 3651.990620 C = 4182.074108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.257 3.743 3 C 0.220 3.780 4 N -0.452 5.452 5 C -0.341 4.341 6 H 0.085 0.915 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.451 3.549 14 O -0.610 6.610 15 C -0.148 4.148 16 C 0.108 3.892 17 O -0.574 6.574 18 C -0.159 4.159 19 C -0.126 4.126 20 C -0.120 4.120 21 H 0.125 0.875 22 H 0.142 0.858 23 H 0.274 0.726 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.383 0.617 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -4.627 -9.881 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.060 4.060 3 C 0.094 3.906 4 N -0.171 5.171 5 C -0.469 4.469 6 H 0.103 0.897 7 C -0.197 4.197 8 N -0.531 5.531 9 Si 0.811 3.189 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.242 3.758 14 O -0.497 6.497 15 C -0.188 4.188 16 C 0.067 3.933 17 O -0.386 6.386 18 C -0.197 4.197 19 C -0.163 4.163 20 C -0.157 4.157 21 H 0.143 0.857 22 H 0.159 0.841 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.153 0.847 26 H 0.238 0.762 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.506 -5.155 -9.861 12.004 hybrid contribution 0.508 1.196 1.758 2.186 sum 5.015 -3.959 -8.102 10.318 Atomic orbital electron populations 1.80909 1.14877 1.11562 1.11646 1.29804 0.95872 0.90377 0.89986 1.19120 0.79987 1.00397 0.91143 1.43826 1.56173 1.05063 1.12079 1.19652 1.31114 0.98830 0.97288 0.89749 1.25876 0.95116 0.98474 1.00188 1.69938 1.20559 1.18175 1.44476 0.85030 0.78133 0.77714 0.78056 1.18332 1.21421 1.20304 1.20995 0.82121 0.81826 0.90819 1.90355 1.52252 1.62330 1.44804 1.22293 1.03660 0.96555 0.96333 1.22187 0.93459 0.89307 0.88346 1.86208 1.73137 1.59363 1.19893 1.23565 0.96355 0.99360 1.00390 1.22697 0.97365 0.96313 0.99944 1.23152 0.99236 0.98444 0.94849 0.85750 0.84107 0.91566 0.89846 0.84741 0.76241 0.87937 0.93325 0.91359 0.88755 0.91406 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.71 18.54 20.01 0.37 -23.34 16 2 C 0.26 10.84 12.95 89.44 1.16 11.99 16 3 C 0.22 7.96 4.91 84.58 0.42 8.37 16 4 N -0.45 -19.95 2.60 -645.40 -1.68 -21.63 16 5 C -0.34 -17.19 9.33 84.04 0.78 -16.40 16 6 H 0.08 4.60 7.38 -2.91 -0.02 4.58 16 7 C 0.01 0.27 4.88 84.93 0.41 0.69 16 8 N -0.89 -43.77 9.45 21.66 0.20 -43.57 16 9 Si 0.99 39.32 29.60 68.60 2.03 41.35 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.29 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.45 19.08 7.33 87.66 0.64 19.73 16 14 O -0.61 -29.89 13.24 15.90 0.21 -29.68 16 15 C -0.15 -4.64 3.95 29.85 0.12 -4.53 16 16 C 0.11 3.40 1.10 -10.27 -0.01 3.39 16 17 O -0.57 -22.47 13.39 -130.03 -1.74 -24.22 16 18 C -0.16 -4.40 7.17 31.12 0.22 -4.18 16 19 C -0.13 -2.83 8.02 31.12 0.25 -2.58 16 20 C -0.12 -2.77 7.47 31.12 0.23 -2.54 16 21 H 0.12 4.66 6.44 -2.38 -0.02 4.64 16 22 H 0.14 3.42 6.69 -2.39 -0.02 3.41 16 23 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 24 H 0.08 2.69 7.50 -2.39 -0.02 2.67 16 25 H 0.13 3.00 7.33 -2.39 -0.02 2.98 16 26 H 0.38 16.47 6.19 -74.06 -0.46 16.01 16 27 H 0.10 2.38 8.03 -2.39 -0.02 2.36 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -64.58 273.77 4.31 -60.27 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.69 Total: 26.87 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 4.23 Total: 13.94 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.10 Total: -88.54 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.53 Total: -53.90 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -64.58 4.31 -60.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.360 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds