Wall clock time and date at job start Sun Mar 29 2020 22:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34618 * 126.11259 * 2 1 4 4 C 1.30957 * 108.61972 * 180.28985 * 3 2 1 5 5 N 1.38651 * 125.69435 * 179.77611 * 4 3 2 6 6 C 1.34776 * 120.00452 * 359.94846 * 5 4 3 7 7 O 1.21282 * 119.99639 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00320 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.47204 * 300.00674 * 8 6 5 10 10 C 1.52998 * 109.46839 * 60.00560 * 8 6 5 11 11 C 1.50696 * 109.46941 * 180.02562 * 8 6 5 12 12 H 1.07999 * 120.00422 * 0.02562 * 11 8 6 13 13 C 1.37882 * 119.99819 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00367 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99946 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47156 * 89.99690 * 15 13 11 17 17 H 1.48499 * 109.47087 * 209.99894 * 15 13 11 18 18 H 1.48504 * 109.47230 * 329.99690 * 15 13 11 19 19 O 1.34192 * 108.60349 * 359.73283 * 4 3 2 20 20 C 1.34182 * 126.10829 * 179.83225 * 2 1 3 21 21 C 1.50706 * 126.37030 * 359.97438 * 20 2 1 22 22 H 1.08999 * 109.47319 * 270.16940 * 1 2 3 23 23 H 1.09003 * 109.46557 * 30.16252 * 1 2 3 24 24 H 1.09000 * 109.47226 * 150.16185 * 1 2 3 25 25 H 0.96998 * 119.99487 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47437 * 59.99508 * 10 8 6 27 27 H 1.08995 * 109.47477 * 179.97438 * 10 8 6 28 28 H 1.09001 * 109.47026 * 299.99869 * 10 8 6 29 29 H 0.96998 * 120.00495 * 180.02562 * 14 13 11 30 30 H 1.09001 * 109.46953 * 179.70919 * 21 20 2 31 31 H 1.09000 * 109.47318 * 299.70517 * 21 20 2 32 32 H 1.09000 * 109.47161 * 59.71147 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3004 1.0875 0.0000 4 6 3.5494 0.6939 -0.0063 5 7 4.6594 1.5247 -0.0127 6 6 4.4997 2.8630 -0.0139 7 8 3.3848 3.3405 -0.0089 8 6 5.7061 3.7659 -0.0215 9 1 6.3096 3.5735 0.8655 10 6 6.5400 3.4922 -1.2748 11 6 5.2569 5.2044 -0.0208 12 1 4.2032 5.4411 -0.0149 13 6 6.1913 6.2184 -0.0265 14 7 5.7994 7.4738 -0.0253 15 14 8.0139 5.8090 -0.0359 16 1 8.4893 5.6994 -1.4385 17 1 8.7663 6.8840 0.6593 18 1 8.2349 4.5180 0.6640 19 8 3.5755 -0.6478 -0.0045 20 6 2.2978 -1.0841 0.0032 21 6 1.8441 -2.5212 0.0079 22 1 -0.3634 0.0030 1.0276 23 1 -0.3632 0.8886 -0.5164 24 1 -0.3634 -0.8914 -0.5113 25 1 5.5510 1.1427 -0.0168 26 1 5.9366 3.6845 -2.1619 27 1 7.4124 4.1456 -1.2806 28 1 6.8649 2.4518 -1.2749 29 1 6.4566 8.1871 -0.0297 30 1 2.7147 -3.1771 0.0045 31 1 1.2494 -2.7115 0.9014 32 1 1.2401 -2.7145 -0.8786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147966747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:10 Heat of formation + Delta-G solvation = -30.408110 kcal Electronic energy + Delta-G solvation = -16746.553333 eV Core-core repulsion = 13901.491864 eV Total energy + Delta-G solvation = -2845.061469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.35395 -40.98585 -36.27676 -36.20326 -35.87645 -33.63212 -32.86209 -30.00255 -27.21271 -26.95056 -24.97025 -23.29044 -22.16116 -21.00476 -19.28188 -18.79164 -18.11600 -17.55728 -16.95621 -16.43906 -16.10292 -15.25396 -14.88834 -14.74403 -14.27813 -14.18476 -14.07781 -13.78580 -13.56962 -13.16358 -12.97632 -12.94223 -12.58297 -12.42108 -12.17365 -11.49890 -11.41422 -11.32631 -11.27723 -10.81143 -10.67049 -9.05955 -8.27863 -6.38310 0.34214 0.74454 1.35608 1.42877 1.43799 1.54097 1.97714 2.34876 2.44442 3.05376 3.41124 3.81383 3.93756 4.17330 4.33704 4.37667 4.52993 4.64968 4.70755 4.77115 4.79225 4.85575 4.95301 5.04675 5.12866 5.33981 5.39606 5.43179 5.50343 5.96796 6.29309 6.74874 6.89596 7.15208 7.28167 8.89715 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051976 B = 0.005675 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.584756 B = 4932.331084 C = 5372.779045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.032 4.032 3 N -0.516 5.516 4 C 0.398 3.602 5 N -0.610 5.610 6 C 0.530 3.470 7 O -0.514 6.514 8 C 0.009 3.991 9 H 0.086 0.914 10 C -0.146 4.146 11 C -0.529 4.529 12 H 0.029 0.971 13 C 0.009 3.991 14 N -0.951 5.951 15 Si 0.960 3.040 16 H -0.258 1.258 17 H -0.300 1.300 18 H -0.223 1.223 19 O -0.214 6.214 20 C -0.065 4.065 21 C -0.054 4.054 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.439 0.561 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 -23.419 -0.512 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.151 4.151 3 N -0.254 5.254 4 C 0.102 3.898 5 N -0.271 5.271 6 C 0.319 3.681 7 O -0.383 6.383 8 C -0.013 4.013 9 H 0.104 0.896 10 C -0.203 4.203 11 C -0.567 4.567 12 H 0.048 0.952 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.784 3.216 16 H -0.184 1.184 17 H -0.228 1.228 18 H -0.146 1.146 19 O -0.102 6.102 20 C -0.117 4.117 21 C -0.110 4.110 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.129 0.871 25 H 0.280 0.720 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.973 -22.244 -0.506 22.337 hybrid contribution 1.144 0.153 0.002 1.154 sum -0.829 -22.091 -0.504 22.112 Atomic orbital electron populations 1.20211 0.84272 1.04063 1.03646 1.22221 0.99703 0.87137 1.06079 1.71069 0.99512 1.31808 1.23025 1.21729 0.88807 0.78405 1.00875 1.42826 1.06170 1.04267 1.73864 1.21752 0.92689 0.79920 0.73758 1.90730 1.28274 1.74188 1.45059 1.19282 0.90663 0.92215 0.99100 0.89622 1.22109 0.98980 1.02123 0.97057 1.21020 0.94115 0.89679 1.51896 0.95247 1.26041 1.05133 0.94102 0.93484 1.70071 1.36710 1.00593 1.51620 0.85712 0.77320 0.79241 0.79357 1.18356 1.22795 1.14594 1.84328 1.32344 1.20472 1.73027 1.23897 0.78420 0.99850 1.09571 1.20480 1.02498 0.82469 1.05565 0.89803 0.92396 0.87113 0.71950 0.93337 0.92753 0.89025 0.92220 0.89391 0.87463 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 10.21 71.24 0.73 -0.70 16 2 C -0.03 -1.00 7.10 41.21 0.29 -0.71 16 3 N -0.52 -21.59 9.47 -301.68 -2.86 -24.45 16 4 C 0.40 14.73 8.98 178.94 1.61 16.34 16 5 N -0.61 -21.15 5.28 -423.80 -2.24 -23.39 16 6 C 0.53 23.98 7.11 87.66 0.62 24.61 16 7 O -0.51 -29.14 14.13 -3.04 -0.04 -29.19 16 8 C 0.01 0.41 2.23 -12.29 -0.03 0.38 16 9 H 0.09 3.40 7.20 -2.39 -0.02 3.39 16 10 C -0.15 -5.26 8.57 71.98 0.62 -4.65 16 11 C -0.53 -31.30 8.96 25.60 0.23 -31.07 16 12 H 0.03 2.08 7.00 -2.91 -0.02 2.06 16 13 C 0.01 0.54 5.45 84.66 0.46 1.00 16 14 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 15 Si 0.96 41.46 24.37 68.60 1.67 43.13 16 16 H -0.26 -10.36 6.87 99.48 0.68 -9.68 16 17 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.22 -8.07 6.53 99.48 0.65 -7.42 16 19 O -0.21 -6.39 10.80 -8.53 -0.09 -6.48 16 20 C -0.06 -1.62 7.38 24.76 0.18 -1.44 16 21 C -0.05 -0.63 9.94 71.24 0.71 0.07 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.11 1.49 7.88 -2.39 -0.02 1.47 16 25 H 0.44 10.63 8.24 -92.71 -0.76 9.87 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.98 3.27 -2.39 -0.01 1.98 16 28 H 0.09 2.29 7.56 -2.39 -0.02 2.27 16 29 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -85.45 272.75 2.47 -82.99 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.31 Total: 13.88 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.42 Total: 3.84 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.80 Total: -108.16 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.14 Total: -35.67 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.67 Total: 43.13 kcal Total: -85.45 2.47 -82.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147966747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.577 kcal (2) G-P(sol) polarization free energy of solvation -85.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds