Wall clock time and date at job start Sun Mar 29 2020 21:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48496 * 109.46855 * 269.99877 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99886 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00428 * 3 2 1 7 7 C 1.38812 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00619 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00325 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46993 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 11 15 15 O 1.21695 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.46656 * 119.99952 * 180.02562 * 14 13 12 17 17 C 1.36547 * 125.98456 * 179.71461 * 16 14 13 18 18 C 1.40369 * 106.70597 * 179.90803 * 17 16 14 19 19 C 1.35135 * 107.11018 * 0.36015 * 18 17 16 20 20 O 1.33926 * 108.77048 * 359.77515 * 19 18 17 21 21 H 0.96997 * 119.99636 * 359.97438 * 1 2 3 22 22 H 0.97010 * 119.99766 * 0.02562 * 9 7 2 23 23 H 1.08992 * 109.46764 * 60.00175 * 10 9 7 24 24 H 1.08996 * 109.46739 * 300.00083 * 10 9 7 25 25 H 1.09004 * 109.47298 * 60.00068 * 11 10 9 26 26 H 1.09004 * 109.47552 * 299.99940 * 11 10 9 27 27 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 28 28 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 29 29 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 30 30 H 1.07996 * 126.64630 * 0.04864 * 17 16 14 31 31 H 1.08001 * 126.44224 * 180.15245 * 18 17 16 32 32 H 1.07998 * 125.61070 * 179.77860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5165 0.0007 13 7 7.8217 -3.2488 0.0000 14 6 8.6975 -4.2732 0.0010 15 8 8.2917 -5.4205 0.0019 16 6 10.1393 -4.0053 0.0009 17 6 11.1300 -4.9449 0.0073 18 6 12.3480 -4.2472 0.0024 19 6 12.0510 -2.9289 0.0015 20 8 10.7193 -2.7872 0.0006 21 1 -0.4849 0.8400 0.0004 22 1 3.8647 -0.3622 -0.0004 23 1 3.8484 -3.0427 -0.8897 24 1 3.8490 -3.0423 0.8902 25 1 5.8796 -1.6199 0.8900 26 1 5.8797 -1.6199 -0.8900 27 1 6.1180 -4.0885 -0.8891 28 1 6.1179 -4.0877 0.8909 29 1 8.1450 -2.3343 -0.0003 30 1 11.0014 -6.0172 0.0126 31 1 13.3365 -4.6822 0.0030 32 1 12.7694 -2.1225 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154211251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:09 Heat of formation + Delta-G solvation = -11.837334 kcal Electronic energy + Delta-G solvation = -15741.029646 eV Core-core repulsion = 12896.773466 eV Total energy + Delta-G solvation = -2844.256179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.98821 -39.59257 -36.26913 -34.60372 -33.39303 -32.11873 -30.68914 -29.60436 -25.79101 -23.43711 -22.20576 -21.88086 -21.33400 -20.41866 -18.77728 -17.49285 -16.68221 -16.53522 -16.09850 -15.61804 -14.67630 -14.31763 -14.25413 -13.74425 -13.33840 -13.31298 -13.01089 -12.81489 -12.59435 -12.04576 -11.23637 -11.06561 -10.93295 -10.73279 -10.40967 -10.40340 -10.15740 -9.60625 -9.34794 -8.96439 -8.91411 -7.25785 -5.77893 -3.14154 0.76784 2.02267 2.37623 2.96983 3.02987 3.35856 3.38241 3.43970 4.37172 4.55752 4.57718 4.69110 4.89318 5.16378 5.28801 5.42129 5.46372 5.52406 5.54118 5.74699 5.87996 5.91762 5.96717 6.09977 6.21326 6.49555 6.66513 6.69624 7.26950 7.88139 7.98200 8.40964 9.19543 9.91631 10.10986 11.40503 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049342 B = 0.003733 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.334457 B = 7498.328831 C = 8039.914184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.121 3.879 13 N -0.716 5.716 14 C 0.599 3.401 15 O -0.521 6.521 16 C -0.076 4.076 17 C -0.123 4.123 18 C -0.226 4.226 19 C -0.008 4.008 20 O -0.164 6.164 21 H 0.260 0.740 22 H 0.361 0.639 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.406 0.594 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.327 -5.508 0.004 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.002 4.002 13 N -0.366 5.366 14 C 0.385 3.615 15 O -0.399 6.399 16 C -0.128 4.128 17 C -0.144 4.144 18 C -0.245 4.245 19 C -0.078 4.078 20 O -0.059 6.059 21 H 0.070 0.930 22 H 0.193 0.807 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.240 0.760 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 25.559 -6.142 0.006 26.287 hybrid contribution 0.971 1.603 0.010 1.874 sum 26.531 -4.540 0.017 26.916 Atomic orbital electron populations 1.69706 1.05112 1.25863 1.57502 1.24693 0.95273 0.97274 1.01998 0.86512 0.79153 0.84884 0.77754 1.21054 1.21679 1.20383 1.19075 0.80553 0.94851 1.43104 0.89118 1.42691 1.04130 1.02149 1.91316 1.20494 0.87499 0.89561 0.99164 1.22008 0.97218 0.96083 1.02780 1.21451 0.77369 0.98253 1.03144 1.45992 1.07365 1.09312 1.73978 1.16553 0.82303 0.85396 0.77239 1.90898 1.77591 1.20626 1.50742 1.22184 0.94064 0.82838 1.13759 1.22003 0.90817 1.00970 1.00563 1.21885 0.99789 0.93364 1.09481 1.24431 0.81652 0.99019 1.02711 1.84071 1.20249 1.31202 1.70405 0.93018 0.80675 0.95073 0.95135 0.91215 0.91197 0.90679 0.90683 0.75971 0.82172 0.82567 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.05 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.76 -18.02 5.41 -59.92 -0.32 -18.35 16 10 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 11 C -0.14 -2.01 5.44 -26.73 -0.15 -2.16 16 12 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 13 N -0.72 -8.39 5.55 -61.62 -0.34 -8.73 16 14 C 0.60 7.92 7.79 -12.86 -0.10 7.82 16 15 O -0.52 -8.47 16.86 5.19 0.09 -8.38 16 16 C -0.08 -0.86 7.13 -36.80 -0.26 -1.12 16 17 C -0.12 -1.21 10.62 -39.39 -0.42 -1.63 16 18 C -0.23 -1.65 10.88 -39.88 -0.43 -2.08 16 19 C -0.01 -0.05 12.08 29.63 0.36 0.30 16 20 O -0.16 -1.56 10.40 5.03 0.05 -1.51 16 21 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 22 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 3.94 8.23 -40.82 -0.34 3.61 16 30 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -34.37 285.65 -5.42 -39.80 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.96 Total: 5.85 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.30 Total: -1.54 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.11 Total: -55.86 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.14 Total: -9.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.37 -5.42 -39.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154211251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.961 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds