Wall clock time and date at job start Sun Mar 29 2020 21:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48496 * 109.46855 * 269.99877 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99886 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00428 * 3 2 1 7 7 C 1.38812 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00619 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00325 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46993 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 11 15 15 O 1.21695 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.46656 * 119.99952 * 180.02562 * 14 13 12 17 17 C 1.36547 * 125.98456 * 179.71461 * 16 14 13 18 18 C 1.40369 * 106.70597 * 179.90803 * 17 16 14 19 19 C 1.35135 * 107.11018 * 0.36015 * 18 17 16 20 20 O 1.33926 * 108.77048 * 359.77515 * 19 18 17 21 21 H 0.96997 * 119.99636 * 359.97438 * 1 2 3 22 22 H 0.97010 * 119.99766 * 0.02562 * 9 7 2 23 23 H 1.08992 * 109.46764 * 60.00175 * 10 9 7 24 24 H 1.08996 * 109.46739 * 300.00083 * 10 9 7 25 25 H 1.09004 * 109.47298 * 60.00068 * 11 10 9 26 26 H 1.09004 * 109.47552 * 299.99940 * 11 10 9 27 27 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 28 28 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 29 29 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 30 30 H 1.07996 * 126.64630 * 0.04864 * 17 16 14 31 31 H 1.08001 * 126.44224 * 180.15245 * 18 17 16 32 32 H 1.07998 * 125.61070 * 179.77860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5165 0.0007 13 7 7.8217 -3.2488 0.0000 14 6 8.6975 -4.2732 0.0010 15 8 8.2917 -5.4205 0.0019 16 6 10.1393 -4.0053 0.0009 17 6 11.1300 -4.9449 0.0073 18 6 12.3480 -4.2472 0.0024 19 6 12.0510 -2.9289 0.0015 20 8 10.7193 -2.7872 0.0006 21 1 -0.4849 0.8400 0.0004 22 1 3.8647 -0.3622 -0.0004 23 1 3.8484 -3.0427 -0.8897 24 1 3.8490 -3.0423 0.8902 25 1 5.8796 -1.6199 0.8900 26 1 5.8797 -1.6199 -0.8900 27 1 6.1180 -4.0885 -0.8891 28 1 6.1179 -4.0877 0.8909 29 1 8.1450 -2.3343 -0.0003 30 1 11.0014 -6.0172 0.0126 31 1 13.3365 -4.6822 0.0030 32 1 12.7694 -2.1225 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154211251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:08 Heat of formation + Delta-G solvation = -38.037584 kcal Electronic energy + Delta-G solvation = -15742.165774 eV Core-core repulsion = 12896.773466 eV Total energy + Delta-G solvation = -2845.392308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.64193 -40.60625 -37.68690 -36.09241 -34.12969 -33.86027 -32.09631 -30.64981 -27.25947 -24.75848 -23.41469 -22.78347 -22.62078 -21.32516 -19.87138 -19.30302 -17.44812 -17.34847 -17.13778 -16.67803 -16.47270 -15.71019 -15.47842 -15.12754 -14.81341 -14.12429 -13.95284 -13.94444 -13.80057 -13.56310 -12.89050 -12.58378 -12.56343 -12.12696 -12.02652 -11.82242 -11.49426 -11.05522 -10.98459 -10.34277 -9.65066 -9.32506 -8.03783 -5.38886 0.01142 1.38369 1.42537 1.43516 1.50854 1.64198 2.06560 2.17544 2.48871 3.27469 3.52425 3.70351 3.95559 4.04805 4.10045 4.20737 4.25539 4.60909 4.67601 4.68703 4.83893 4.91241 4.95831 5.15977 5.26675 5.28212 5.39823 5.74155 5.82805 6.19943 6.38084 6.94358 7.06618 7.81200 8.01785 9.17800 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049342 B = 0.003733 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.334457 B = 7498.328831 C = 8039.914184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.242 4.242 8 H 0.054 0.946 9 N -0.759 5.759 10 C 0.154 3.846 11 C -0.123 4.123 12 C 0.129 3.871 13 N -0.706 5.706 14 C 0.598 3.402 15 O -0.563 6.563 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.235 4.235 19 C 0.011 3.989 20 O -0.171 6.171 21 H 0.259 0.741 22 H 0.369 0.631 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.417 0.583 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.920 -3.871 0.029 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.171 1.171 7 C -0.373 4.373 8 H 0.072 0.928 9 N -0.405 5.405 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.005 3.995 13 N -0.357 5.357 14 C 0.386 3.614 15 O -0.444 6.444 16 C -0.162 4.162 17 C -0.147 4.147 18 C -0.254 4.254 19 C -0.058 4.058 20 O -0.067 6.067 21 H 0.068 0.932 22 H 0.202 0.798 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.254 0.746 30 H 0.176 0.824 31 H 0.201 0.799 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 29.208 -4.510 0.032 29.554 hybrid contribution -0.078 0.995 -0.001 0.998 sum 29.130 -3.515 0.031 29.342 Atomic orbital electron populations 1.69905 1.07346 1.26898 1.59426 1.25627 0.96239 1.01719 1.02287 0.85300 0.78715 0.78853 0.78247 1.20188 1.22227 1.17082 1.19056 0.82814 0.93572 1.41871 0.92816 1.42666 1.02496 1.04233 1.91136 1.20654 0.90338 0.87580 0.98682 1.21771 0.93556 0.96808 1.04007 1.21236 0.78097 0.97424 1.02729 1.45828 1.06614 1.09797 1.73456 1.16805 0.83359 0.84906 0.76367 1.90864 1.78589 1.22124 1.52867 1.21784 0.93194 0.83976 1.17237 1.22281 0.91943 1.01077 0.99405 1.22238 0.99996 0.93542 1.09601 1.25412 0.80909 1.00220 0.99258 1.84060 1.21644 1.30327 1.70639 0.93228 0.79781 0.95430 0.95538 0.90014 0.89882 0.91215 0.91248 0.74600 0.82417 0.79871 0.72857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.82 13.97 21.65 0.30 -63.52 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.96 44.88 27.74 68.60 1.90 46.79 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 7 C -0.24 -14.04 10.47 84.03 0.88 -13.16 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.76 -35.25 5.41 -343.47 -1.86 -37.11 16 10 C 0.15 5.68 6.26 86.38 0.54 6.22 16 11 C -0.12 -3.21 5.44 30.59 0.17 -3.04 16 12 C 0.13 3.18 5.67 86.38 0.49 3.67 16 13 N -0.71 -15.68 5.55 -467.08 -2.59 -18.28 16 14 C 0.60 15.63 7.79 86.44 0.67 16.30 16 15 O -0.56 -18.72 16.86 -4.33 -0.07 -18.79 16 16 C -0.11 -2.36 7.13 24.07 0.17 -2.19 16 17 C -0.13 -2.34 10.62 22.39 0.24 -2.10 16 18 C -0.24 -2.72 10.88 22.07 0.24 -2.48 16 19 C 0.01 0.11 12.08 67.10 0.81 0.92 16 20 O -0.17 -2.83 10.40 -4.93 -0.05 -2.89 16 21 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 22 H 0.37 15.85 5.53 -92.70 -0.51 15.34 16 23 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.42 7.23 8.23 -92.71 -0.76 6.47 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.26 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -76.31 285.65 2.11 -74.20 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.19 Total: 18.99 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.68 Total: 0.60 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -4.15 Total: -118.90 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.12 Total: -21.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.79 kcal Total: -76.31 2.11 -74.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154211251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.161 kcal (2) G-P(sol) polarization free energy of solvation -76.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds