Wall clock time and date at job start Sun Mar 29 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99632 * 2 1 4 4 H 1.48503 * 109.47185 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47077 * 30.00002 * 3 2 1 6 6 H 1.48497 * 109.46927 * 149.99959 * 3 2 1 7 7 C 1.38808 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47099 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47081 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00159 * 180.02562 * 13 12 11 15 15 O 1.21618 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.47375 * 120.00298 * 180.02562 * 14 13 12 17 17 C 1.47019 * 127.19544 * 180.30930 * 16 14 13 18 18 C 1.34177 * 105.95809 * 180.14977 * 17 16 14 19 19 O 1.34214 * 109.12112 * 359.60541 * 18 17 16 20 20 C 1.33655 * 110.90867 * 0.26473 * 19 18 17 21 21 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00517 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47513 * 59.99790 * 10 9 7 24 24 H 1.09004 * 109.47039 * 299.99402 * 10 9 7 25 25 H 1.09002 * 109.46835 * 60.00168 * 11 10 9 26 26 H 1.08996 * 109.46748 * 299.99841 * 11 10 9 27 27 H 1.09000 * 109.46783 * 59.99582 * 12 11 10 28 28 H 1.08996 * 109.47039 * 300.00029 * 12 11 10 29 29 H 0.97003 * 120.00142 * 0.02562 * 13 12 11 30 30 H 1.08005 * 127.02507 * 0.02562 * 17 16 14 31 31 H 1.08002 * 125.44341 * 179.87398 * 18 17 16 32 32 H 1.08001 * 125.79919 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.8292 -6.1447 -0.0018 13 7 0.8773 -7.2582 -0.0018 14 6 1.3266 -8.5289 -0.0018 15 8 2.5223 -8.7511 -0.0023 16 6 0.3690 -9.6491 -0.0024 17 6 0.6817 -11.0857 0.0038 18 6 -0.5004 -11.7205 -0.0027 19 8 -1.4877 -10.8114 -0.0036 20 6 -0.9929 -9.5698 -0.0034 21 1 -0.4850 0.8400 0.0004 22 1 0.3558 -2.3881 -0.0005 23 1 2.6850 -3.7144 0.8894 24 1 2.6849 -3.7144 -0.8906 25 1 0.4378 -4.7618 -0.8914 26 1 0.4372 -4.7622 0.8886 27 1 2.4559 -6.2028 0.8881 28 1 2.4559 -6.2019 -0.8918 29 1 -0.0764 -7.0811 -0.0018 30 1 1.6625 -11.5377 0.0102 31 1 -0.6358 -12.7920 -0.0026 32 1 -1.5727 -8.6586 -0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154588107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:54 Heat of formation + Delta-G solvation = -17.332621 kcal Electronic energy + Delta-G solvation = -15630.897128 eV Core-core repulsion = 12786.402655 eV Total energy + Delta-G solvation = -2844.494473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.80743 -39.44034 -36.03831 -34.38043 -33.16060 -31.98468 -30.36488 -29.23863 -25.58696 -23.67174 -22.31856 -21.72835 -21.20347 -20.08309 -18.61611 -17.04478 -16.44294 -16.29312 -15.86645 -15.56848 -15.04382 -14.51291 -14.23462 -13.57913 -13.30654 -13.19329 -12.98256 -12.68396 -12.46120 -11.65409 -10.98313 -10.93587 -10.80112 -10.63874 -10.16543 -10.08959 -10.00732 -9.71571 -9.19870 -9.02083 -8.88905 -6.94695 -5.78290 -3.07250 1.09288 1.80837 2.62052 3.09027 3.25410 3.43607 3.48734 3.50495 4.30201 4.41502 4.58261 4.79733 5.07912 5.25464 5.29165 5.37312 5.56573 5.59299 5.62157 5.96188 5.98949 6.04451 6.17343 6.30292 6.40958 6.63958 6.77352 6.81639 7.42600 7.69379 8.14149 8.40755 9.51914 10.08741 10.43462 11.44764 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.067266 B = 0.003311 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.156402 B = 8453.561724 C = 8843.967596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.123 3.877 13 N -0.723 5.723 14 C 0.583 3.417 15 O -0.538 6.538 16 C -0.233 4.233 17 C -0.166 4.166 18 C -0.043 4.043 19 O -0.175 6.175 20 C 0.020 3.980 21 H 0.255 0.745 22 H 0.383 0.617 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.398 0.602 30 H 0.159 0.841 31 H 0.209 0.791 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -22.118 0.023 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C 0.000 4.000 13 N -0.375 5.375 14 C 0.370 3.630 15 O -0.416 6.416 16 C -0.238 4.238 17 C -0.185 4.185 18 C -0.109 4.109 19 O -0.070 6.070 20 C -0.050 4.050 21 H 0.065 0.935 22 H 0.217 0.783 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.177 0.823 31 H 0.225 0.775 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.073 -22.211 0.032 22.423 hybrid contribution -0.139 1.085 -0.010 1.094 sum -3.212 -21.126 0.022 21.369 Atomic orbital electron populations 1.69659 1.05141 1.25699 1.57865 1.24754 0.95563 0.97769 1.02982 0.86162 0.78662 0.83669 0.77549 1.21675 1.21743 1.20705 1.19250 0.91123 0.84113 1.42636 0.91074 1.42336 1.05864 0.99996 1.89633 1.20524 0.93261 0.85145 0.98277 1.21954 0.99623 0.93290 1.02745 1.21392 0.91653 0.84295 1.02689 1.45923 1.10622 1.05543 1.75374 1.17278 0.87504 0.81870 0.76352 1.90792 1.16098 1.84759 1.49974 1.21611 0.93324 0.94915 1.13924 1.22810 0.99632 0.91091 1.04998 1.23956 0.85139 0.94886 1.06875 1.83797 1.37364 1.15013 1.70833 1.24507 0.93238 0.86833 1.00440 0.93499 0.78305 0.95987 0.96000 0.91245 0.91240 0.91151 0.91144 0.76804 0.82299 0.77479 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.65 5.60 -59.90 -0.34 -18.98 16 10 C 0.16 3.10 6.26 -4.04 -0.03 3.07 16 11 C -0.14 -2.07 5.44 -26.73 -0.15 -2.22 16 12 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 13 N -0.72 -8.48 5.55 -61.40 -0.34 -8.82 16 14 C 0.58 7.95 7.81 -12.54 -0.10 7.85 16 15 O -0.54 -9.48 16.98 5.26 0.09 -9.39 16 16 C -0.23 -2.55 6.31 -103.28 -0.65 -3.20 16 17 C -0.17 -1.61 11.01 -37.46 -0.41 -2.02 16 18 C -0.04 -0.31 12.03 29.30 0.35 0.04 16 19 O -0.18 -1.45 10.52 7.65 0.08 -1.37 16 20 C 0.02 0.16 11.61 30.08 0.35 0.51 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 22 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.40 3.43 7.44 -40.82 -0.30 3.13 16 30 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.21 0.90 7.47 -52.49 -0.39 0.51 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -34.97 287.93 -5.30 -40.28 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.94 Total: 5.80 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.90 Total: -1.77 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.05 Total: -55.36 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.17 Total: -10.76 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.97 -5.30 -40.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154588107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.943 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds