Wall clock time and date at job start Sun Mar 29 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99632 * 2 1 4 4 H 1.48503 * 109.47185 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47077 * 30.00002 * 3 2 1 6 6 H 1.48497 * 109.46927 * 149.99959 * 3 2 1 7 7 C 1.38808 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47099 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47081 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00159 * 180.02562 * 13 12 11 15 15 O 1.21618 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.47375 * 120.00298 * 180.02562 * 14 13 12 17 17 C 1.47019 * 127.19544 * 180.30930 * 16 14 13 18 18 C 1.34177 * 105.95809 * 180.14977 * 17 16 14 19 19 O 1.34214 * 109.12112 * 359.60541 * 18 17 16 20 20 C 1.33655 * 110.90867 * 0.26473 * 19 18 17 21 21 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00517 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47513 * 59.99790 * 10 9 7 24 24 H 1.09004 * 109.47039 * 299.99402 * 10 9 7 25 25 H 1.09002 * 109.46835 * 60.00168 * 11 10 9 26 26 H 1.08996 * 109.46748 * 299.99841 * 11 10 9 27 27 H 1.09000 * 109.46783 * 59.99582 * 12 11 10 28 28 H 1.08996 * 109.47039 * 300.00029 * 12 11 10 29 29 H 0.97003 * 120.00142 * 0.02562 * 13 12 11 30 30 H 1.08005 * 127.02507 * 0.02562 * 17 16 14 31 31 H 1.08002 * 125.44341 * 179.87398 * 18 17 16 32 32 H 1.08001 * 125.79919 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.8292 -6.1447 -0.0018 13 7 0.8773 -7.2582 -0.0018 14 6 1.3266 -8.5289 -0.0018 15 8 2.5223 -8.7511 -0.0023 16 6 0.3690 -9.6491 -0.0024 17 6 0.6817 -11.0857 0.0038 18 6 -0.5004 -11.7205 -0.0027 19 8 -1.4877 -10.8114 -0.0036 20 6 -0.9929 -9.5698 -0.0034 21 1 -0.4850 0.8400 0.0004 22 1 0.3558 -2.3881 -0.0005 23 1 2.6850 -3.7144 0.8894 24 1 2.6849 -3.7144 -0.8906 25 1 0.4378 -4.7618 -0.8914 26 1 0.4372 -4.7622 0.8886 27 1 2.4559 -6.2028 0.8881 28 1 2.4559 -6.2019 -0.8918 29 1 -0.0764 -7.0811 -0.0018 30 1 1.6625 -11.5377 0.0102 31 1 -0.6358 -12.7920 -0.0026 32 1 -1.5727 -8.6586 -0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154588107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:54 Heat of formation + Delta-G solvation = -43.624776 kcal Electronic energy + Delta-G solvation = -15632.037242 eV Core-core repulsion = 12786.402655 eV Total energy + Delta-G solvation = -2845.634586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.46056 -40.51502 -37.51577 -35.94216 -34.09888 -33.53318 -31.58325 -30.42081 -27.13852 -25.09501 -23.67580 -22.65622 -22.32130 -21.03090 -19.49970 -18.99394 -17.28198 -17.15719 -16.98783 -16.70386 -16.43123 -15.71203 -15.49138 -15.30125 -14.98275 -14.32009 -13.88534 -13.84089 -13.43359 -13.23395 -12.82217 -12.58852 -12.43936 -12.08325 -12.05798 -11.80193 -11.20864 -10.94767 -10.86430 -10.19353 -9.72385 -9.02100 -7.96907 -5.25997 0.35792 1.13821 1.48077 1.49582 1.58196 1.98799 2.17230 2.30579 2.56351 3.37080 3.63220 3.74293 3.80172 4.07913 4.10941 4.28146 4.44744 4.56913 4.72001 4.72373 4.77610 4.87956 5.03174 5.25753 5.31218 5.32876 5.37448 5.48810 5.99879 6.26106 6.50004 7.15410 7.32656 8.07088 8.31250 9.26590 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.067266 B = 0.003311 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.156402 B = 8453.561724 C = 8843.967596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.710 5.710 14 C 0.581 3.419 15 O -0.589 6.589 16 C -0.272 4.272 17 C -0.200 4.200 18 C -0.022 4.022 19 O -0.177 6.177 20 C 0.046 3.954 21 H 0.253 0.747 22 H 0.376 0.624 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.415 0.585 30 H 0.153 0.847 31 H 0.248 0.752 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -22.908 0.027 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.371 3.629 15 O -0.471 6.471 16 C -0.277 4.277 17 C -0.220 4.220 18 C -0.087 4.087 19 O -0.071 6.071 20 C -0.024 4.024 21 H 0.061 0.939 22 H 0.209 0.791 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.252 0.748 30 H 0.171 0.829 31 H 0.264 0.736 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.064 -23.027 0.036 23.383 hybrid contribution 0.154 1.242 -0.013 1.252 sum -3.910 -21.785 0.023 22.133 Atomic orbital electron populations 1.69800 1.06525 1.26217 1.59316 1.25576 0.96480 1.01116 1.03488 0.85131 0.77700 0.79367 0.77504 1.21299 1.21948 1.19559 1.19644 0.91560 0.85445 1.41555 0.90780 1.42532 1.05765 1.01126 1.89562 1.20683 0.94124 0.84778 0.97996 1.21702 0.98489 0.91860 1.03518 1.21124 0.91682 0.84253 1.02041 1.45720 1.11280 1.04600 1.74622 1.17690 0.87324 0.82701 0.75198 1.90757 1.18306 1.85491 1.52570 1.21533 0.94235 0.94559 1.17325 1.22971 1.00617 0.91126 1.07275 1.24616 0.83845 0.96185 1.04087 1.83850 1.37590 1.15253 1.70407 1.25103 0.92283 0.87829 0.97220 0.93861 0.79150 0.96026 0.96028 0.90451 0.90443 0.91919 0.91909 0.74760 0.82899 0.73593 0.73547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -37.77 5.60 -343.43 -1.92 -39.69 16 10 C 0.15 5.92 6.26 86.38 0.54 6.46 16 11 C -0.12 -3.38 5.44 30.60 0.17 -3.21 16 12 C 0.13 3.54 5.67 86.38 0.49 4.03 16 13 N -0.71 -15.78 5.55 -466.43 -2.59 -18.37 16 14 C 0.58 15.75 7.81 86.65 0.68 16.43 16 15 O -0.59 -21.40 16.98 -4.09 -0.07 -21.47 16 16 C -0.27 -5.67 6.31 -18.99 -0.12 -5.79 16 17 C -0.20 -3.75 11.01 23.65 0.26 -3.49 16 18 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 19 O -0.18 -2.38 10.52 4.46 0.05 -2.33 16 20 C 0.05 0.61 11.61 67.39 0.78 1.39 16 21 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 22 H 0.38 19.79 7.67 -92.71 -0.71 19.08 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.42 6.16 7.44 -92.71 -0.69 5.47 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.25 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.25 1.11 7.47 -2.91 -0.02 1.09 16 Total: -1.00 -75.85 287.93 2.43 -73.43 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.26 Total: 19.46 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.91 Total: -0.68 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.23 Total: -116.50 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.02 Total: -23.80 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.85 2.43 -73.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154588107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.803 kcal (2) G-P(sol) polarization free energy of solvation -75.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds