Wall clock time and date at job start Sun Mar 29 2020 21:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86806 * 119.99575 * 2 1 4 4 H 1.48506 * 109.47038 * 239.99853 * 3 2 1 5 5 H 1.48498 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46944 * 120.00421 * 3 2 1 7 7 C 1.39926 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00339 * 197.53014 * 7 2 1 9 9 C 1.41426 * 119.99853 * 17.52679 * 7 2 1 10 10 C 1.40803 * 120.62173 * 203.48664 * 9 7 2 11 11 N 1.31461 * 120.56010 * 179.97438 * 10 9 7 12 12 C 1.32024 * 122.06138 * 359.69586 * 11 10 9 13 13 C 1.39290 * 121.20380 * 0.59653 * 12 11 10 14 14 N 1.39722 * 120.36099 * 179.69224 * 13 12 11 15 15 C 1.46500 * 119.99995 * 359.73186 * 14 13 12 16 16 C 1.52997 * 109.47228 * 179.97438 * 15 14 13 17 17 H 1.09005 * 109.46973 * 304.99192 * 16 15 14 18 18 O 1.42896 * 109.47449 * 64.99400 * 16 15 14 19 19 C 1.53003 * 109.47412 * 184.99643 * 16 15 14 20 20 O 1.42891 * 109.47459 * 174.99608 * 19 16 15 21 21 C 1.38695 * 119.27715 * 359.42286 * 13 12 11 22 22 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.71897 * 359.95799 * 10 9 7 24 24 H 1.07995 * 119.39616 * 180.29440 * 12 11 10 25 25 H 0.96996 * 120.00090 * 179.71939 * 14 13 12 26 26 H 1.08997 * 109.47464 * 59.99090 * 15 14 13 27 27 H 1.09007 * 109.46764 * 299.99132 * 15 14 13 28 28 H 0.96695 * 114.00251 * 60.00116 * 18 16 15 29 29 H 1.09000 * 109.46920 * 54.99447 * 19 16 15 30 30 H 1.09001 * 109.46622 * 294.99925 * 19 16 15 31 31 H 0.96700 * 114.00594 * 180.02562 * 20 19 16 32 32 H 1.08001 * 120.93160 * 180.25153 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0504 -1.2336 0.2812 9 6 1.3502 -2.4080 -0.3699 10 6 1.8307 -3.6561 0.0703 11 7 1.2180 -4.7673 -0.2734 12 6 0.1366 -4.7658 -1.0307 13 6 -0.4035 -3.5768 -1.5153 14 7 -1.5450 -3.5963 -2.3208 15 6 -2.1772 -4.8723 -2.6647 16 6 -3.3991 -4.6143 -3.5486 17 1 -4.0706 -3.9183 -3.0458 18 8 -2.9768 -4.0539 -4.7934 19 6 -4.1307 -5.9334 -3.8052 20 8 -5.3340 -5.6772 -4.5319 21 6 0.2010 -2.3730 -1.1850 22 1 -0.4850 0.8401 0.0004 23 1 2.7103 -3.7010 0.6953 24 1 -0.3351 -5.7040 -1.2830 25 1 -1.9191 -2.7649 -2.6520 26 1 -2.4897 -5.3806 -1.7525 27 1 -1.4645 -5.4974 -3.2030 28 1 -2.3757 -4.6204 -5.2960 29 1 -4.3746 -6.4047 -2.8531 30 1 -3.4899 -6.5972 -4.3856 31 1 -5.8505 -6.4703 -4.7299 32 1 -0.1976 -1.4352 -1.5427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163354969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:39 Heat of formation + Delta-G solvation = -78.309856 kcal Electronic energy + Delta-G solvation = -16361.720179 eV Core-core repulsion = 13514.581534 eV Total energy + Delta-G solvation = -2847.138644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.79083 -38.03502 -36.12433 -34.65578 -33.87527 -30.81100 -30.13581 -27.99318 -25.64340 -24.60070 -22.29209 -21.29055 -20.55894 -17.69216 -17.26791 -16.72806 -16.22955 -15.84484 -15.31756 -14.95454 -14.54175 -14.12615 -13.67509 -13.33579 -12.91285 -12.89619 -12.65213 -12.03120 -11.59902 -11.45754 -11.20856 -10.99912 -10.81993 -10.53994 -10.36465 -10.14318 -9.85786 -9.51736 -9.29791 -8.06061 -7.74572 -6.83507 -6.39253 -4.45800 2.76731 3.04619 3.07160 3.13598 3.26672 3.63446 3.89229 4.35814 4.41413 4.66552 4.83724 4.95555 5.07546 5.24072 5.37557 5.74057 5.79452 6.04152 6.12505 6.56562 6.65771 6.90875 7.10271 7.17410 7.35149 7.56712 7.61334 7.72290 7.97976 8.20487 8.47002 8.62863 8.77433 8.87960 9.75749 10.11750 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.005439 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.522949 B = 5146.952231 C = 5829.630966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.051 4.051 11 N -0.446 5.446 12 C -0.102 4.102 13 C 0.175 3.825 14 N -0.749 5.749 15 C 0.108 3.892 16 C 0.097 3.903 17 H 0.109 0.891 18 O -0.549 6.549 19 C 0.047 3.953 20 O -0.565 6.565 21 C -0.210 4.210 22 H 0.282 0.718 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.395 0.605 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.373 0.627 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.377 0.623 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -6.400 -6.586 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.216 4.216 11 N -0.153 5.153 12 C -0.261 4.261 13 C 0.074 3.926 14 N -0.384 5.384 15 C -0.018 4.018 16 C 0.038 3.962 17 H 0.127 0.873 18 O -0.354 6.354 19 C -0.031 4.031 20 O -0.369 6.369 21 C -0.240 4.240 22 H 0.093 0.907 23 H 0.141 0.859 24 H 0.130 0.870 25 H 0.230 0.770 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.224 0.776 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.122 -6.148 -6.056 11.189 hybrid contribution -0.067 0.775 -0.501 0.925 sum -7.188 -5.374 -6.557 11.115 Atomic orbital electron populations 1.69825 1.07694 1.29424 1.34195 1.25955 0.94737 1.01466 0.92080 0.86334 0.80146 0.79979 0.80093 1.18730 1.20325 1.18856 1.19530 0.98117 0.90987 1.39541 0.89978 1.18265 0.91038 0.93379 0.88251 1.22329 1.03668 0.88079 1.07561 1.66810 1.06812 1.32130 1.09562 1.21181 1.00131 0.94313 1.10464 1.18671 0.86968 0.95620 0.91384 1.44170 1.30291 1.06146 1.57754 1.21620 0.93481 0.88563 0.98137 1.22147 0.94306 0.94544 0.85231 0.87321 1.86636 1.68062 1.48108 1.32587 1.22839 0.86946 0.97453 0.95895 1.86553 1.36065 1.36805 1.77522 1.21096 1.01766 0.95116 1.06038 0.90738 0.85932 0.86990 0.77026 0.92120 0.92692 0.78010 0.92389 0.93061 0.77596 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.91 55.55 0.61 -19.51 16 2 C 0.08 1.90 5.18 -17.35 -0.09 1.81 16 3 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.88 9.08 -37.74 -0.34 -12.22 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 9 C 0.10 2.59 5.59 -106.69 -0.60 1.99 16 10 C -0.05 -1.34 10.97 -16.74 -0.18 -1.52 16 11 N -0.45 -11.38 10.33 -12.37 -0.13 -11.50 16 12 C -0.10 -2.41 10.49 -17.08 -0.18 -2.59 16 13 C 0.17 4.08 6.66 -83.70 -0.56 3.52 16 14 N -0.75 -14.06 5.68 -58.58 -0.33 -14.40 16 15 C 0.11 1.55 4.56 -4.04 -0.02 1.53 16 16 C 0.10 1.21 3.28 -26.73 -0.09 1.13 16 17 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 18 O -0.55 -7.45 13.25 -40.08 -0.53 -7.98 16 19 C 0.05 0.46 6.68 37.16 0.25 0.70 16 20 O -0.56 -5.92 13.62 -40.08 -0.55 -6.47 16 21 C -0.21 -5.47 8.67 -38.39 -0.33 -5.80 16 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 23 H 0.12 2.96 8.06 -52.49 -0.42 2.54 16 24 H 0.11 2.33 6.73 -52.49 -0.35 1.98 16 25 H 0.40 7.38 8.49 -40.82 -0.35 7.03 16 26 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 27 H 0.05 0.75 7.97 -51.93 -0.41 0.34 16 28 H 0.37 3.77 9.05 45.56 0.41 4.19 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 2.04 9.12 45.56 0.42 2.46 16 32 H 0.13 3.35 6.19 -52.49 -0.32 3.03 16 LS Contribution 280.05 15.07 4.22 4.22 Total: -1.00 -31.43 280.05 -6.15 -37.58 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -2.26 Total: 16.15 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.14 Total: -11.46 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.15 Total: -45.41 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.08 Total: -14.45 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.43 -6.15 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163354969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.730 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds