Wall clock time and date at job start Sun Mar 29 2020 21:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86806 * 119.99575 * 2 1 4 4 H 1.48506 * 109.47038 * 239.99853 * 3 2 1 5 5 H 1.48498 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46944 * 120.00421 * 3 2 1 7 7 C 1.39926 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00339 * 197.53014 * 7 2 1 9 9 C 1.41426 * 119.99853 * 17.52679 * 7 2 1 10 10 C 1.40803 * 120.62173 * 203.48664 * 9 7 2 11 11 N 1.31461 * 120.56010 * 179.97438 * 10 9 7 12 12 C 1.32024 * 122.06138 * 359.69586 * 11 10 9 13 13 C 1.39290 * 121.20380 * 0.59653 * 12 11 10 14 14 N 1.39722 * 120.36099 * 179.69224 * 13 12 11 15 15 C 1.46500 * 119.99995 * 359.73186 * 14 13 12 16 16 C 1.52997 * 109.47228 * 179.97438 * 15 14 13 17 17 H 1.09005 * 109.46973 * 304.99192 * 16 15 14 18 18 O 1.42896 * 109.47449 * 64.99400 * 16 15 14 19 19 C 1.53003 * 109.47412 * 184.99643 * 16 15 14 20 20 O 1.42891 * 109.47459 * 174.99608 * 19 16 15 21 21 C 1.38695 * 119.27715 * 359.42286 * 13 12 11 22 22 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.71897 * 359.95799 * 10 9 7 24 24 H 1.07995 * 119.39616 * 180.29440 * 12 11 10 25 25 H 0.96996 * 120.00090 * 179.71939 * 14 13 12 26 26 H 1.08997 * 109.47464 * 59.99090 * 15 14 13 27 27 H 1.09007 * 109.46764 * 299.99132 * 15 14 13 28 28 H 0.96695 * 114.00251 * 60.00116 * 18 16 15 29 29 H 1.09000 * 109.46920 * 54.99447 * 19 16 15 30 30 H 1.09001 * 109.46622 * 294.99925 * 19 16 15 31 31 H 0.96700 * 114.00594 * 180.02562 * 20 19 16 32 32 H 1.08001 * 120.93160 * 180.25153 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0504 -1.2336 0.2812 9 6 1.3502 -2.4080 -0.3699 10 6 1.8307 -3.6561 0.0703 11 7 1.2180 -4.7673 -0.2734 12 6 0.1366 -4.7658 -1.0307 13 6 -0.4035 -3.5768 -1.5153 14 7 -1.5450 -3.5963 -2.3208 15 6 -2.1772 -4.8723 -2.6647 16 6 -3.3991 -4.6143 -3.5486 17 1 -4.0706 -3.9183 -3.0458 18 8 -2.9768 -4.0539 -4.7934 19 6 -4.1307 -5.9334 -3.8052 20 8 -5.3340 -5.6772 -4.5319 21 6 0.2010 -2.3730 -1.1850 22 1 -0.4850 0.8401 0.0004 23 1 2.7103 -3.7010 0.6953 24 1 -0.3351 -5.7040 -1.2830 25 1 -1.9191 -2.7649 -2.6520 26 1 -2.4897 -5.3806 -1.7525 27 1 -1.4645 -5.4974 -3.2030 28 1 -2.3757 -4.6204 -5.2960 29 1 -4.3746 -6.4047 -2.8531 30 1 -3.4899 -6.5972 -4.3856 31 1 -5.8505 -6.4703 -4.7299 32 1 -0.1976 -1.4352 -1.5427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163354969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:38 Heat of formation + Delta-G solvation = -105.367644 kcal Electronic energy + Delta-G solvation = -16362.893493 eV Core-core repulsion = 13514.581534 eV Total energy + Delta-G solvation = -2848.311958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37766 -39.29382 -37.07192 -36.16685 -35.69906 -32.36049 -31.79771 -29.46264 -27.54115 -25.84829 -23.91671 -22.61015 -22.34441 -19.18460 -18.53253 -17.83059 -17.48281 -17.20547 -17.11250 -16.57747 -16.19521 -15.18381 -14.99131 -14.86536 -14.36473 -14.30627 -13.66589 -13.58028 -13.45267 -13.20457 -13.10755 -12.65723 -12.19878 -11.86854 -11.79339 -11.21165 -11.14927 -11.11709 -10.94134 -10.01960 -9.71382 -8.69792 -8.12354 -6.44663 0.94037 1.19728 1.39724 1.51212 1.57351 2.19929 2.50106 2.77050 3.27587 3.47110 3.79977 3.97793 4.04291 4.19323 4.27932 4.46183 4.53943 4.63584 4.66750 4.85485 4.96832 5.02922 5.17519 5.29624 5.69975 5.86777 6.00782 6.33370 6.71299 6.73115 6.82202 6.83401 6.89741 7.03309 7.80428 8.27253 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.005439 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.522949 B = 5146.952231 C = 5829.630966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.485 4.485 8 H 0.085 0.915 9 C 0.072 3.928 10 C -0.079 4.079 11 N -0.454 5.454 12 C -0.107 4.107 13 C 0.185 3.815 14 N -0.743 5.743 15 C 0.106 3.894 16 C 0.103 3.897 17 H 0.092 0.908 18 O -0.570 6.570 19 C 0.053 3.947 20 O -0.589 6.589 21 C -0.239 4.239 22 H 0.290 0.710 23 H 0.130 0.870 24 H 0.145 0.855 25 H 0.395 0.605 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.387 0.613 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.399 0.601 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -6.878 -7.301 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.514 4.514 8 H 0.103 0.897 9 C 0.067 3.933 10 C -0.242 4.242 11 N -0.161 5.161 12 C -0.267 4.267 13 C 0.081 3.919 14 N -0.375 5.375 15 C -0.019 4.019 16 C 0.043 3.957 17 H 0.110 0.890 18 O -0.377 6.377 19 C -0.025 4.025 20 O -0.398 6.398 21 C -0.270 4.270 22 H 0.100 0.900 23 H 0.147 0.853 24 H 0.162 0.838 25 H 0.229 0.771 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.236 0.764 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.249 0.751 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.769 -6.675 -6.791 12.289 hybrid contribution -0.002 0.825 -0.346 0.894 sum -7.772 -5.850 -7.137 12.064 Atomic orbital electron populations 1.69879 1.09179 1.30821 1.34174 1.26833 0.95485 1.04686 0.90914 0.85192 0.78754 0.75193 0.80236 1.18438 1.19235 1.18038 1.19839 0.98572 0.92010 1.41001 0.89684 1.18591 0.91783 0.94146 0.88799 1.22446 1.04670 0.88194 1.08930 1.66819 1.07451 1.31924 1.09891 1.21688 0.99663 0.95598 1.09727 1.18703 0.87646 0.94693 0.90850 1.44311 1.28818 1.08138 1.56241 1.21871 0.94376 0.86506 0.99148 1.22038 0.93352 0.95877 0.84408 0.89030 1.86601 1.68673 1.49372 1.33053 1.22747 0.86952 0.95650 0.97172 1.86483 1.36640 1.38951 1.77707 1.21081 1.02716 0.95673 1.07512 0.89965 0.85282 0.83793 0.77115 0.91171 0.91153 0.76358 0.90771 0.90823 0.75058 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.31 10.91 21.82 0.24 -42.07 16 2 C 0.04 1.86 5.18 85.25 0.44 2.30 16 3 Si 0.99 37.58 29.59 68.60 2.03 39.61 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.48 -26.10 9.08 23.46 0.21 -25.89 16 8 H 0.09 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.07 3.99 5.59 -21.21 -0.12 3.87 16 10 C -0.08 -4.17 10.97 85.38 0.94 -3.23 16 11 N -0.45 -23.05 10.33 -193.06 -1.99 -25.05 16 12 C -0.11 -4.93 10.49 84.92 0.89 -4.03 16 13 C 0.19 8.58 6.66 38.25 0.25 8.83 16 14 N -0.74 -27.14 5.68 -339.23 -1.93 -29.07 16 15 C 0.11 2.76 4.56 86.38 0.39 3.16 16 16 C 0.10 2.35 3.28 30.59 0.10 2.45 16 17 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 18 O -0.57 -14.49 13.25 -144.34 -1.91 -16.40 16 19 C 0.05 0.86 6.68 71.98 0.48 1.34 16 20 O -0.59 -10.85 13.62 -144.34 -1.97 -12.82 16 21 C -0.24 -12.72 8.67 23.04 0.20 -12.52 16 22 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 23 H 0.13 6.43 8.06 -2.91 -0.02 6.41 16 24 H 0.14 5.59 6.73 -2.91 -0.02 5.57 16 25 H 0.39 14.62 8.49 -92.71 -0.79 13.83 16 26 H 0.07 1.76 7.95 -2.39 -0.02 1.74 16 27 H 0.07 1.68 7.97 -2.38 -0.02 1.66 16 28 H 0.39 7.00 9.05 -74.06 -0.67 6.33 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.40 3.20 9.12 -74.06 -0.68 2.53 16 32 H 0.11 6.16 6.19 -2.91 -0.02 6.14 16 Total: -1.00 -67.99 280.05 -2.70 -70.69 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.96 Total: 38.84 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 3.79 Total: -23.73 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -3.68 Total: -96.19 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -3.88 Total: -29.22 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -67.99 -2.70 -70.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163354969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.681 kcal (2) G-P(sol) polarization free energy of solvation -67.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds