Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99882 * 3 2 1 5 5 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99867 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 11 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 11 16 16 C 1.50698 * 109.47166 * 179.97438 * 15 13 12 17 17 C 1.41382 * 126.80382 * 124.70753 * 16 15 13 18 18 C 1.35450 * 103.98724 * 179.89091 * 17 16 15 19 19 O 1.34037 * 106.44669 * 0.37273 * 18 17 16 20 20 N 1.20921 * 111.56701 * 359.74481 * 19 18 17 21 21 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 23 23 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 24 24 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 25 25 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 26 26 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 27 27 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 28 28 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 29 29 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 30 30 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 31 31 H 1.08005 * 128.00407 * 0.02562 * 17 16 15 32 32 H 1.08001 * 126.77440 * 180.09926 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7906 -7.5929 0.0058 15 6 2.9623 -8.5167 -0.0064 16 6 2.2089 -9.8218 -0.0045 17 6 2.3387 -10.8762 -0.9374 18 6 1.4595 -11.8096 -0.5010 19 8 0.8777 -11.3004 0.5939 20 7 1.3053 -10.1994 0.8532 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8720 -3.6044 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 0.8534 -5.0451 -0.8887 27 1 0.8538 -5.0446 0.8914 28 1 3.3860 -5.9234 -0.0041 29 1 3.5846 -8.4574 -0.8993 30 1 3.5933 -8.4606 0.8807 31 1 2.9900 -10.9267 -1.7975 32 1 1.2627 -12.7722 -0.9495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177516717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = 6.928038 kcal Electronic energy + Delta-G solvation = -15771.648366 eV Core-core repulsion = 12928.205914 eV Total energy + Delta-G solvation = -2843.442452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.04759 -39.50227 -35.55725 -34.64116 -33.32693 -31.89524 -31.35127 -29.51927 -26.53892 -23.39917 -23.18615 -21.69008 -20.72214 -19.83496 -17.92503 -17.74805 -16.73183 -16.40355 -15.73201 -15.51438 -14.81549 -14.45446 -14.23785 -13.59664 -13.36794 -13.09618 -12.55959 -12.28004 -11.83720 -11.67437 -11.36925 -10.88897 -10.74090 -10.63239 -10.35138 -9.87523 -9.87153 -9.75592 -9.37023 -9.13214 -8.79291 -8.37534 -6.02133 -4.05582 1.40882 2.06189 2.74854 3.13492 3.31585 3.36121 3.37131 3.40746 3.95511 4.38063 4.43954 4.84704 4.95552 5.01554 5.10494 5.30611 5.33416 5.51654 5.70673 5.77198 5.82895 6.15436 6.46827 6.58923 6.81860 6.99302 7.62657 7.67264 7.75438 7.96409 8.19549 8.35259 8.39042 9.00959 9.58567 11.09179 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.087337 B = 0.003309 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.520745 B = 8458.464804 C = 8648.999551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.726 5.726 13 C 0.508 3.492 14 O -0.530 6.530 15 C -0.064 4.064 16 C 0.024 3.976 17 C -0.229 4.229 18 C -0.066 4.066 19 O 0.105 5.895 20 N -0.335 5.335 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.399 0.601 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.171 0.829 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 -21.895 -2.355 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.006 4.006 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.406 6.406 15 C -0.104 4.104 16 C -0.136 4.136 17 C -0.251 4.251 18 C -0.148 4.148 19 O 0.035 5.965 20 N -0.036 5.036 21 H 0.072 0.928 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.232 0.768 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.189 0.811 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.725 -21.335 -1.252 22.405 hybrid contribution 1.411 0.846 -0.885 1.868 sum 8.136 -20.489 -2.137 22.148 Atomic orbital electron populations 1.69957 1.06075 1.26835 1.50413 1.25036 0.94864 0.99319 0.95251 0.86631 0.79551 0.83063 0.78581 1.20245 1.21256 1.20231 1.21168 0.92953 0.90958 1.51136 0.92682 1.19026 0.93856 0.90842 0.97667 1.21888 0.99763 0.93311 1.00867 1.21651 0.91870 0.85040 1.02016 1.46158 1.10828 1.05734 1.75012 1.20270 0.89570 0.83913 0.77070 1.90753 1.16668 1.84600 1.48621 1.20018 0.97029 0.87506 1.05889 1.22906 0.98232 0.98143 0.94291 1.22690 1.04934 0.94047 1.03403 1.25989 0.96424 1.01658 0.90700 1.84886 1.50843 1.23311 1.37505 1.73915 1.11342 0.95612 1.22707 0.92841 0.96294 0.96265 0.92697 0.92707 0.91823 0.91750 0.76759 0.86695 0.87028 0.81123 0.76839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 12 N -0.73 -10.27 5.56 -60.29 -0.33 -10.61 16 13 C 0.51 7.63 7.82 -10.98 -0.09 7.54 16 14 O -0.53 -10.61 15.59 5.56 0.09 -10.53 16 15 C -0.06 -0.65 6.30 -29.04 -0.18 -0.83 16 16 C 0.02 0.29 6.10 -82.10 -0.50 -0.21 16 17 C -0.23 -2.00 11.12 -39.38 -0.44 -2.44 16 18 C -0.07 -0.52 12.30 29.74 0.37 -0.16 16 19 O 0.10 1.25 11.20 17.19 0.19 1.44 16 20 N -0.34 -4.92 11.46 33.42 0.38 -4.54 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.40 4.26 8.47 -40.82 -0.35 3.92 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -35.93 287.85 -5.29 -41.22 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.11 Total: -2.04 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.56 Total: -9.52 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.78 Total: -41.43 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.28 Total: -9.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.93 -5.29 -41.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177516717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.147 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds