Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99882 * 3 2 1 5 5 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99867 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 11 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 11 16 16 C 1.50698 * 109.47166 * 179.97438 * 15 13 12 17 17 C 1.41382 * 126.80382 * 124.70753 * 16 15 13 18 18 C 1.35450 * 103.98724 * 179.89091 * 17 16 15 19 19 O 1.34037 * 106.44669 * 0.37273 * 18 17 16 20 20 N 1.20921 * 111.56701 * 359.74481 * 19 18 17 21 21 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 23 23 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 24 24 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 25 25 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 26 26 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 27 27 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 28 28 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 29 29 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 30 30 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 31 31 H 1.08005 * 128.00407 * 0.02562 * 17 16 15 32 32 H 1.08001 * 126.77440 * 180.09926 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7906 -7.5929 0.0058 15 6 2.9623 -8.5167 -0.0064 16 6 2.2089 -9.8218 -0.0045 17 6 2.3387 -10.8762 -0.9374 18 6 1.4595 -11.8096 -0.5010 19 8 0.8777 -11.3004 0.5939 20 7 1.3053 -10.1994 0.8532 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8720 -3.6044 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 0.8534 -5.0451 -0.8887 27 1 0.8538 -5.0446 0.8914 28 1 3.3860 -5.9234 -0.0041 29 1 3.5846 -8.4574 -0.8993 30 1 3.5933 -8.4606 0.8807 31 1 2.9900 -10.9267 -1.7975 32 1 1.2627 -12.7722 -0.9495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177516717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -19.653460 kcal Electronic energy + Delta-G solvation = -15772.801026 eV Core-core repulsion = 12928.205914 eV Total energy + Delta-G solvation = -2844.595112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.84259 -40.74082 -37.05959 -35.53476 -35.20766 -33.15337 -32.57211 -30.61723 -28.31016 -25.08960 -24.02021 -22.71072 -22.34019 -21.05103 -18.75947 -18.62195 -18.49351 -17.76254 -16.94727 -16.84215 -16.45650 -15.82685 -15.48509 -14.74899 -14.26146 -14.21753 -13.97039 -13.74668 -13.60631 -13.18897 -12.71406 -12.56676 -12.42307 -12.17899 -11.68624 -11.61711 -11.28829 -11.17688 -10.76846 -10.56127 -10.49113 -10.13005 -8.20468 -6.32640 0.72922 1.30656 1.41227 1.44602 1.52490 1.59669 2.23604 2.42366 2.58039 3.13161 3.22256 3.68251 3.91203 4.15985 4.17926 4.26641 4.43236 4.48861 4.52481 4.67579 4.89472 4.92090 4.98122 5.15230 5.23146 5.41345 5.51015 5.68406 5.82527 6.20333 6.55831 6.85088 7.25066 7.37280 7.46547 8.91676 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.087337 B = 0.003309 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.520745 B = 8458.464804 C = 8648.999551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.130 3.870 12 N -0.712 5.712 13 C 0.503 3.497 14 O -0.587 6.587 15 C -0.054 4.054 16 C 0.001 3.999 17 C -0.232 4.232 18 C -0.056 4.056 19 O 0.084 5.916 20 N -0.392 5.392 21 H 0.263 0.737 22 H -0.009 1.009 23 H -0.011 1.011 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.420 0.580 29 H 0.159 0.841 30 H 0.136 0.864 31 H 0.206 0.794 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.248 -22.700 -3.317 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.006 3.994 12 N -0.365 5.365 13 C 0.290 3.710 14 O -0.467 6.467 15 C -0.094 4.094 16 C -0.158 4.158 17 C -0.254 4.254 18 C -0.137 4.137 19 O 0.017 5.983 20 N -0.096 5.096 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.007 0.993 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.257 0.743 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.223 0.777 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 9.721 -22.166 -2.215 24.305 hybrid contribution 0.461 1.014 -0.617 1.273 sum 10.183 -21.151 -2.832 23.645 Atomic orbital electron populations 1.70115 1.08060 1.27916 1.51629 1.26068 0.95751 1.03715 0.94715 0.85435 0.78154 0.77714 0.79348 1.18838 1.21233 1.18967 1.21667 0.93834 0.91936 1.50602 0.91297 1.18950 0.94497 0.93186 0.94888 1.21591 0.98364 0.91491 1.02349 1.21195 0.92095 0.85890 1.00251 1.45903 1.11285 1.04725 1.74544 1.21178 0.89704 0.84807 0.75293 1.90734 1.19499 1.85397 1.51077 1.20146 0.95835 0.84292 1.09093 1.23486 0.97994 0.99505 0.94793 1.23153 1.05583 0.92882 1.03748 1.26958 0.94865 1.02920 0.88928 1.84809 1.51452 1.22898 1.39185 1.73915 1.13461 0.97128 1.25107 0.92797 0.99085 0.99296 0.91248 0.90907 0.93500 0.93964 0.74275 0.82338 0.84635 0.77697 0.72238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 11 C 0.13 4.72 5.67 86.38 0.49 5.21 16 12 N -0.71 -19.16 5.56 -463.05 -2.57 -21.73 16 13 C 0.50 14.70 7.82 87.65 0.69 15.39 16 14 O -0.59 -24.11 15.59 -3.04 -0.05 -24.15 16 15 C -0.05 -0.96 6.30 29.10 0.18 -0.78 16 16 C 0.00 0.02 6.10 43.58 0.27 0.29 16 17 C -0.23 -3.40 11.12 22.40 0.25 -3.15 16 18 C -0.06 -0.75 12.30 67.18 0.83 0.07 16 19 O 0.08 1.99 11.20 71.67 0.80 2.79 16 20 N -0.39 -11.61 11.46 -49.55 -0.57 -12.18 16 21 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.42 7.73 8.47 -92.71 -0.79 6.94 16 29 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.26 0.51 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -82.49 287.85 3.97 -78.52 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 0.34 Total: 3.86 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.71 Total: -15.34 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.86 Total: -91.57 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.75 Total: -21.36 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -82.49 3.97 -78.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177516717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.867 kcal (2) G-P(sol) polarization free energy of solvation -82.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds