Wall clock time and date at job start Sun Mar 29 2020 22:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 353.85782 * 3 2 1 5 5 N 1.46492 * 109.47540 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47166 * 60.00152 * 11 9 7 13 13 H 1.48506 * 109.47069 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47159 * 299.99829 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 H 1.09001 * 112.67836 * 295.73435 * 17 15 5 19 19 C 1.53365 * 113.39124 * 66.30454 * 17 15 5 20 20 C 1.53374 * 81.25936 * 88.41599 * 19 17 15 21 21 O 1.43344 * 113.39292 * 165.22145 * 17 15 5 22 22 H 1.09000 * 109.47122 * 233.85837 * 3 2 1 23 23 H 1.09001 * 109.47264 * 113.85205 * 3 2 1 24 24 H 1.08999 * 109.47326 * 59.99276 * 4 3 2 25 25 H 1.09006 * 109.46825 * 300.00118 * 4 3 2 26 26 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 27 27 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 28 28 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 29 29 H 1.08994 * 114.56602 * 201.50742 * 19 17 15 30 30 H 1.08994 * 114.56803 * 335.32606 * 19 17 15 31 31 H 1.09003 * 113.38895 * 271.58646 * 20 19 17 32 32 H 1.08996 * 113.43389 * 141.38895 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4333 0.1543 5 7 4.5836 -1.4326 0.1550 6 6 5.3166 -1.5679 -1.1063 7 6 5.5687 -3.0269 -1.3868 8 1 5.2175 -3.7783 -0.6951 9 6 6.2466 -3.4026 -2.5270 10 7 6.6737 -2.4876 -3.3696 11 14 6.5584 -5.2112 -2.8752 12 1 5.2610 -5.9265 -2.9772 13 1 7.3016 -5.3483 -4.1536 14 1 7.3610 -5.7966 -1.7714 15 6 5.2569 -1.3076 1.3157 16 8 6.4697 -1.3120 1.3168 17 6 4.5029 -1.1679 2.6130 18 1 3.9144 -0.2516 2.6606 19 6 3.7085 -2.4233 2.9938 20 6 5.0441 -2.7827 3.6566 21 8 5.3195 -1.3806 3.7717 22 1 2.9710 0.6069 0.8299 23 1 2.9711 0.4164 -0.9399 24 1 2.7555 -2.0397 -0.6755 25 1 2.7555 -1.8491 1.0942 26 1 4.7278 -1.1385 -1.9167 27 1 6.2688 -1.0426 -1.0312 28 1 7.1504 -2.7519 -4.1721 29 1 2.8895 -2.2472 3.6910 30 1 3.4349 -3.0592 2.1518 31 1 5.7308 -3.3054 2.9907 32 1 4.9300 -3.2818 4.6189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181582927.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:59 Heat of formation + Delta-G solvation = -11.900531 kcal Electronic energy + Delta-G solvation = -17068.872008 eV Core-core repulsion = 14224.613088 eV Total energy + Delta-G solvation = -2844.258920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22167 -38.32730 -36.85603 -35.31268 -32.94643 -30.90388 -30.18054 -27.90320 -26.26016 -24.18741 -23.16893 -21.21272 -18.76727 -17.56526 -16.93615 -16.55519 -16.35419 -15.97852 -15.43792 -14.78638 -14.68695 -14.21037 -13.85130 -13.37600 -12.93871 -12.64876 -12.49976 -12.32353 -12.23099 -11.83018 -11.34843 -11.19492 -11.03166 -10.86560 -10.70068 -10.64169 -10.32847 -10.15854 -9.78013 -8.81362 -8.51163 -7.93461 -6.12956 -4.18161 2.68460 2.78058 3.07842 3.27044 3.32432 3.34130 3.47835 3.97588 4.13961 4.15596 4.37550 4.79398 4.95218 5.01642 5.09412 5.22067 5.31642 5.41028 5.46149 5.61040 5.77530 5.85264 5.87953 6.02742 6.06859 6.86275 7.29055 7.35594 7.54102 7.82225 8.11310 8.15281 8.75005 8.89595 9.47436 10.95188 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.008802 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.486732 B = 3180.395257 C = 4153.209094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.107 3.893 5 N -0.590 5.590 6 C 0.244 3.756 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.498 3.502 16 O -0.515 6.515 17 C 0.038 3.962 18 H 0.116 0.884 19 C -0.184 4.184 20 C 0.028 3.972 21 O -0.343 6.343 22 H 0.106 0.894 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 1.843 9.085 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.019 4.019 5 N -0.323 5.323 6 C 0.126 3.874 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.283 3.717 16 O -0.390 6.390 17 C -0.024 4.024 18 H 0.134 0.866 19 C -0.221 4.221 20 C -0.049 4.049 21 O -0.260 6.260 22 H 0.124 0.876 23 H 0.136 0.864 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.265 2.037 9.083 12.449 hybrid contribution 0.528 -1.023 -0.439 1.232 sum -7.737 1.014 8.644 11.645 Atomic orbital electron populations 1.81213 1.13015 1.08609 1.09340 1.29074 0.95064 0.93126 0.92825 1.19896 0.81418 1.01408 1.06561 1.21541 0.82168 0.93673 1.04495 1.48193 1.04904 1.70544 1.08703 1.19389 0.92660 0.97508 0.77862 1.21348 1.37032 0.92046 1.06556 0.92414 1.24915 0.95235 0.97831 0.95952 1.69908 1.38045 1.33014 1.12145 0.86573 0.78406 0.84916 0.77626 1.20213 1.21149 1.20168 1.20400 0.88320 0.78144 0.84858 1.90732 1.13464 1.48634 1.86205 1.23042 0.91234 1.00925 0.87178 0.86608 1.24454 0.98641 0.96897 1.02114 1.23666 0.94698 0.85037 1.01535 1.89927 1.73404 1.21160 1.41531 0.87571 0.86374 0.88519 0.90038 0.94499 0.93516 0.92542 0.87632 0.88887 0.89481 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.30 18.54 42.15 0.78 -5.52 16 2 C 0.22 2.50 15.43 -20.76 -0.32 2.18 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.11 1.36 5.02 -4.05 -0.02 1.34 16 5 N -0.59 -10.52 2.46 -175.06 -0.43 -10.95 16 6 C 0.24 5.67 5.16 -5.19 -0.03 5.65 16 7 C -0.53 -13.87 9.39 -34.44 -0.32 -14.19 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 11 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.50 9.31 6.54 -10.98 -0.07 9.24 16 16 O -0.52 -12.43 16.31 -11.00 -0.18 -12.61 16 17 C 0.04 0.54 3.96 -40.44 -0.16 0.38 16 18 H 0.12 1.25 7.51 -51.93 -0.39 0.86 16 19 C -0.18 -2.03 6.89 -26.35 -0.18 -2.22 16 20 C 0.03 0.37 8.39 24.60 0.21 0.58 16 21 O -0.34 -5.55 12.29 -51.79 -0.64 -6.19 16 22 H 0.11 0.85 7.51 -51.93 -0.39 0.46 16 23 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 25 H 0.08 0.85 4.41 -51.93 -0.23 0.62 16 26 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 27 H 0.05 1.25 7.43 -51.93 -0.39 0.87 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.03 6.66 -51.93 -0.35 0.69 16 31 H 0.09 1.36 7.83 -51.93 -0.41 0.95 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -33.08 284.02 -5.44 -38.51 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.80 Total: -2.81 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.17 Total: 3.87 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 1.09 Total: -40.91 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.82 Total: -18.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.08 -5.44 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181582927.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.614 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds