Wall clock time and date at job start Sun Mar 29 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 353.85782 * 3 2 1 5 5 N 1.46492 * 109.47540 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47166 * 60.00152 * 11 9 7 13 13 H 1.48506 * 109.47069 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47159 * 299.99829 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 H 1.09001 * 112.67836 * 295.73435 * 17 15 5 19 19 C 1.53365 * 113.39124 * 66.30454 * 17 15 5 20 20 C 1.53374 * 81.25936 * 88.41599 * 19 17 15 21 21 O 1.43344 * 113.39292 * 165.22145 * 17 15 5 22 22 H 1.09000 * 109.47122 * 233.85837 * 3 2 1 23 23 H 1.09001 * 109.47264 * 113.85205 * 3 2 1 24 24 H 1.08999 * 109.47326 * 59.99276 * 4 3 2 25 25 H 1.09006 * 109.46825 * 300.00118 * 4 3 2 26 26 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 27 27 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 28 28 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 29 29 H 1.08994 * 114.56602 * 201.50742 * 19 17 15 30 30 H 1.08994 * 114.56803 * 335.32606 * 19 17 15 31 31 H 1.09003 * 113.38895 * 271.58646 * 20 19 17 32 32 H 1.08996 * 113.43389 * 141.38895 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4333 0.1543 5 7 4.5836 -1.4326 0.1550 6 6 5.3166 -1.5679 -1.1063 7 6 5.5687 -3.0269 -1.3868 8 1 5.2175 -3.7783 -0.6951 9 6 6.2466 -3.4026 -2.5270 10 7 6.6737 -2.4876 -3.3696 11 14 6.5584 -5.2112 -2.8752 12 1 5.2610 -5.9265 -2.9772 13 1 7.3016 -5.3483 -4.1536 14 1 7.3610 -5.7966 -1.7714 15 6 5.2569 -1.3076 1.3157 16 8 6.4697 -1.3120 1.3168 17 6 4.5029 -1.1679 2.6130 18 1 3.9144 -0.2516 2.6606 19 6 3.7085 -2.4233 2.9938 20 6 5.0441 -2.7827 3.6566 21 8 5.3195 -1.3806 3.7717 22 1 2.9710 0.6069 0.8299 23 1 2.9711 0.4164 -0.9399 24 1 2.7555 -2.0397 -0.6755 25 1 2.7555 -1.8491 1.0942 26 1 4.7278 -1.1385 -1.9167 27 1 6.2688 -1.0426 -1.0312 28 1 7.1504 -2.7519 -4.1721 29 1 2.8895 -2.2472 3.6910 30 1 3.4349 -3.0592 2.1518 31 1 5.7308 -3.3054 2.9907 32 1 4.9300 -3.2818 4.6189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181582927.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:58 Heat of formation + Delta-G solvation = -34.595348 kcal Electronic energy + Delta-G solvation = -17069.856129 eV Core-core repulsion = 14224.613088 eV Total energy + Delta-G solvation = -2845.243041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.40169 -39.70898 -37.97256 -36.72542 -34.87431 -32.18949 -31.32819 -29.44932 -27.66124 -25.37419 -24.86484 -22.42018 -20.08737 -18.74527 -18.33603 -18.07097 -17.61262 -17.26886 -16.63361 -16.50883 -15.72911 -15.61215 -15.29113 -14.61388 -14.22792 -14.15127 -13.60052 -13.54676 -13.54044 -13.19449 -12.94541 -12.75297 -12.51864 -12.18457 -12.13550 -11.94688 -11.76724 -11.68671 -11.37263 -10.58655 -10.22969 -9.53657 -8.18433 -6.30816 1.40433 1.43582 1.49931 1.60841 1.79472 1.87056 2.16554 2.43213 2.95901 3.08017 3.12781 3.14700 3.65362 4.03435 4.07050 4.12700 4.30684 4.48407 4.57494 4.74429 4.82512 4.84826 4.92748 5.02407 5.07536 5.13808 5.32536 5.58531 5.85183 6.11326 6.62051 6.67636 6.78948 7.30072 7.44718 8.88418 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.008802 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.486732 B = 3180.395257 C = 4153.209094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.247 3.753 3 C -0.040 4.040 4 C 0.103 3.897 5 N -0.587 5.587 6 C 0.258 3.742 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.260 1.260 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.491 3.509 16 O -0.585 6.585 17 C 0.038 3.962 18 H 0.160 0.840 19 C -0.156 4.156 20 C 0.014 3.986 21 O -0.369 6.369 22 H 0.137 0.863 23 H 0.121 0.879 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.039 0.961 27 H 0.001 0.999 28 H 0.265 0.735 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 1.367 10.423 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.070 4.070 3 C -0.081 4.081 4 C -0.021 4.021 5 N -0.318 5.318 6 C 0.137 3.863 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.209 1.209 14 H -0.206 1.206 15 C 0.279 3.721 16 O -0.464 6.464 17 C -0.023 4.023 18 H 0.177 0.823 19 C -0.193 4.193 20 C -0.062 4.062 21 O -0.286 6.286 22 H 0.155 0.845 23 H 0.139 0.861 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.481 1.559 10.432 14.870 hybrid contribution 1.231 -0.859 -0.836 1.718 sum -9.250 0.700 9.596 13.347 Atomic orbital electron populations 1.81263 1.14321 1.09948 1.10968 1.29055 0.94819 0.91789 0.91381 1.19833 0.80292 0.99894 1.08121 1.21791 0.78656 0.95678 1.05968 1.48041 1.06971 1.69885 1.06905 1.18860 0.91481 0.95530 0.80442 1.21713 1.36552 0.93426 1.06282 0.92518 1.25743 0.95203 1.01909 0.96040 1.70021 1.39010 1.34903 1.12651 0.85612 0.78788 0.80147 0.77145 1.18464 1.20871 1.20586 1.21409 0.87851 0.76369 0.86509 1.90696 1.16698 1.51712 1.87315 1.23149 0.90892 1.04540 0.83751 0.82312 1.24472 0.98226 0.94233 1.02393 1.23795 0.95550 0.84001 1.02895 1.89912 1.74227 1.22646 1.41832 0.84503 0.86138 0.89246 0.86957 0.94271 0.98106 0.92564 0.83195 0.88772 0.93023 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.65 18.54 20.00 0.37 -12.28 16 2 C 0.25 4.93 15.43 89.44 1.38 6.31 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.10 2.33 5.02 86.38 0.43 2.77 16 5 N -0.59 -20.54 2.46 -826.15 -2.03 -22.57 16 6 C 0.26 12.29 5.16 85.63 0.44 12.73 16 7 C -0.54 -28.71 9.39 25.60 0.24 -28.47 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -53.41 13.29 21.44 0.28 -53.12 16 11 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 C 0.49 18.20 6.54 87.66 0.57 18.77 16 16 O -0.58 -29.37 16.31 12.79 0.21 -29.16 16 17 C 0.04 0.96 3.96 21.71 0.09 1.04 16 18 H 0.16 2.61 7.51 -2.39 -0.02 2.59 16 19 C -0.16 -2.80 6.89 30.84 0.21 -2.59 16 20 C 0.01 0.35 8.39 63.85 0.54 0.89 16 21 O -0.37 -11.26 12.29 -133.15 -1.64 -12.90 16 22 H 0.14 1.54 7.51 -2.39 -0.02 1.52 16 23 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 25 H 0.11 1.87 4.41 -2.38 -0.01 1.86 16 26 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 27 H 0.00 0.05 7.43 -2.39 -0.02 0.03 16 28 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 29 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.71 6.66 -2.39 -0.02 1.69 16 31 H 0.05 1.64 7.83 -2.39 -0.02 1.62 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -76.20 284.02 4.89 -71.30 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.13 Total: 1.72 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 4.54 Total: 11.98 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.37 Total: -87.97 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.43 Total: -42.06 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.20 4.89 -71.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181582927.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.708 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds