Wall clock time and date at job start Sun Mar 29 2020 22:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47199 * 159.40744 * 3 2 1 5 5 N 1.46503 * 109.47167 * 175.03755 * 4 3 2 6 6 C 1.46497 * 119.99900 * 274.91826 * 5 4 3 7 7 C 1.50695 * 109.47320 * 89.99986 * 6 5 4 8 8 H 1.08001 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99650 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47254 * 60.00453 * 11 9 7 13 13 H 1.48507 * 109.47058 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47344 * 300.00282 * 11 9 7 15 15 C 1.34774 * 119.99651 * 94.91384 * 5 4 3 16 16 O 1.21278 * 120.00156 * 4.65883 * 15 5 4 17 17 C 1.50704 * 119.99820 * 184.65890 * 15 5 4 18 18 H 1.08996 * 113.03792 * 59.63233 * 17 15 5 19 19 C 1.54031 * 113.86223 * 287.65288 * 17 15 5 20 20 C 1.54039 * 85.82605 * 268.43190 * 19 17 15 21 21 O 1.44179 * 113.86396 * 191.61182 * 17 15 5 22 22 H 1.08994 * 109.46821 * 279.41212 * 3 2 1 23 23 H 1.08997 * 109.46820 * 39.40990 * 3 2 1 24 24 H 1.09000 * 109.47721 * 295.04414 * 4 3 2 25 25 H 1.09003 * 109.46745 * 55.04207 * 4 3 2 26 26 H 1.09008 * 109.46716 * 209.99726 * 6 5 4 27 27 H 1.08998 * 109.47485 * 329.99689 * 6 5 4 28 28 H 0.96998 * 119.99503 * 180.02562 * 10 9 7 29 29 H 1.09006 * 113.82110 * 22.65823 * 19 17 15 30 30 H 1.09000 * 113.81372 * 154.20689 * 19 17 15 31 31 H 1.09001 * 113.85758 * 91.56728 * 20 19 17 32 32 H 1.08994 * 113.86675 * 223.14397 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3512 -0.5073 5 7 4.5775 1.3955 -0.3961 6 6 5.2041 1.7939 0.8667 7 6 5.4279 0.5745 1.7233 8 1 5.1324 -0.4000 1.3632 9 6 6.0098 0.7026 2.9667 10 7 6.3691 1.8893 3.4053 11 14 6.2865 -0.8090 4.0287 12 1 7.1743 -1.7606 3.3136 13 1 6.9218 -0.4051 5.3088 14 1 4.9828 -1.4629 4.3083 15 6 5.3442 1.0696 -1.4555 16 8 4.8277 0.8216 -2.5245 17 6 6.8433 1.0132 -1.3119 18 1 7.1733 0.2923 -0.5639 19 6 7.5092 2.3959 -1.1811 20 6 7.6474 2.3495 -2.7146 21 8 7.5462 0.9148 -2.5668 22 1 2.9713 -0.1672 1.0138 23 1 2.9716 -0.7932 -0.6524 24 1 2.8283 1.4801 -1.5504 25 1 2.6829 2.1516 0.0916 26 1 6.1609 2.2745 0.6618 27 1 4.5520 2.4920 1.3916 28 1 6.7788 1.9793 4.2799 29 1 6.8373 3.1761 -0.8232 30 1 8.4622 2.3772 -0.6525 31 1 6.8086 2.7983 -3.2467 32 1 8.6160 2.6899 -3.0805 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181582928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:01 Heat of formation + Delta-G solvation = -21.762713 kcal Electronic energy + Delta-G solvation = -17109.777635 eV Core-core repulsion = 14265.091059 eV Total energy + Delta-G solvation = -2844.686576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58343 -38.32695 -36.52180 -35.27265 -32.89454 -31.36474 -29.28368 -27.41078 -26.98474 -23.79859 -23.21798 -21.00076 -18.52527 -17.49335 -16.86690 -16.33122 -16.04484 -15.84248 -15.33969 -14.67180 -14.49474 -14.32075 -13.84365 -13.13545 -12.71837 -12.43455 -12.34108 -12.20213 -12.05713 -11.63390 -11.53607 -11.16166 -10.96449 -10.79066 -10.69060 -10.48367 -10.19758 -10.02955 -9.82874 -8.86324 -8.65248 -8.00596 -6.31698 -4.40264 2.86016 3.04846 3.14035 3.16958 3.23253 3.26189 3.53260 4.03690 4.21695 4.44546 4.61028 5.01888 5.07223 5.28266 5.39226 5.42874 5.50292 5.80801 5.82466 5.97733 6.07788 6.20363 6.27697 6.30470 6.35441 6.55545 7.02222 7.31238 7.61234 7.80087 7.88729 8.06187 8.61588 8.77651 9.28749 10.74870 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.011794 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.690881 B = 2373.608763 C = 4011.618687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.223 3.777 3 C -0.050 4.050 4 C 0.129 3.871 5 N -0.591 5.591 6 C 0.227 3.773 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.513 3.487 16 O -0.556 6.556 17 C 0.055 3.945 18 H 0.139 0.861 19 C -0.165 4.165 20 C 0.028 3.972 21 O -0.360 6.360 22 H 0.130 0.870 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 1.630 -4.708 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.095 4.095 3 C -0.091 4.091 4 C 0.004 3.996 5 N -0.323 5.323 6 C 0.108 3.892 7 C -0.586 4.586 8 H 0.083 0.917 9 C -0.135 4.135 10 N -0.524 5.524 11 Si 0.721 3.279 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.300 3.700 16 O -0.435 6.435 17 C -0.006 4.006 18 H 0.156 0.844 19 C -0.203 4.203 20 C -0.049 4.049 21 O -0.278 6.278 22 H 0.148 0.852 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.414 1.400 -5.255 5.454 hybrid contribution 0.616 -0.726 1.068 1.431 sum 1.030 0.673 -4.187 4.364 Atomic orbital electron populations 1.81151 1.13158 1.09111 1.10075 1.29272 0.95246 0.92712 0.92225 1.19909 0.80808 1.01399 1.07024 1.21099 0.81372 0.95051 1.02118 1.48169 1.04900 1.65346 1.13907 1.19701 0.94436 0.96353 0.78728 1.21457 1.41890 0.93869 1.01354 0.91668 1.24923 0.94892 0.96098 0.97557 1.69893 1.40462 1.22297 1.19769 0.86616 0.78780 0.82851 0.79657 1.19939 1.21172 1.20019 1.20538 0.89181 0.76587 0.83650 1.90639 1.74977 1.50492 1.27409 1.23141 0.89923 1.00121 0.87399 0.84383 1.24551 1.02471 0.96790 0.96477 1.24018 1.01989 0.82666 0.96216 1.89806 1.73797 1.22982 1.41172 0.85225 0.87610 0.89868 0.90124 0.93368 0.94193 0.92302 0.90051 0.87853 0.90373 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.98 18.54 42.15 0.78 -7.20 16 2 C 0.22 3.44 15.43 -20.76 -0.32 3.12 16 3 C -0.05 -0.73 5.94 -29.52 -0.18 -0.90 16 4 C 0.13 2.00 5.49 -4.04 -0.02 1.98 16 5 N -0.59 -10.56 2.46 -175.06 -0.43 -10.99 16 6 C 0.23 4.56 4.95 -5.20 -0.03 4.53 16 7 C -0.55 -12.14 8.44 -34.44 -0.29 -12.43 16 8 H 0.07 1.42 7.31 -52.49 -0.38 1.04 16 9 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -22.10 13.29 55.43 0.74 -21.37 16 11 Si 0.89 18.76 29.54 -169.99 -5.02 13.74 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 C 0.51 9.70 6.97 -10.98 -0.08 9.62 16 16 O -0.56 -11.79 16.26 -10.63 -0.17 -11.96 16 17 C 0.06 0.97 4.07 -27.43 -0.11 0.86 16 18 H 0.14 2.47 8.10 -51.93 -0.42 2.05 16 19 C -0.17 -2.44 6.64 -25.65 -0.17 -2.61 16 20 C 0.03 0.40 8.97 37.61 0.34 0.73 16 21 O -0.36 -6.48 12.04 -51.42 -0.62 -7.10 16 22 H 0.13 1.98 6.76 -51.93 -0.35 1.63 16 23 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.08 1.30 7.23 -51.93 -0.38 0.92 16 25 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 26 H 0.05 0.98 4.77 -51.92 -0.25 0.74 16 27 H 0.04 0.85 7.94 -51.93 -0.41 0.44 16 28 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 29 H 0.08 1.20 7.01 -51.93 -0.36 0.84 16 30 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 283.75 15.07 4.28 4.28 Total: -1.00 -27.55 283.75 -5.20 -32.75 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.79 Total: 1.42 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.95 Total: 6.44 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.09 Total: -39.56 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.79 Total: -19.07 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.55 -5.20 -32.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181582928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.987 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds