Wall clock time and date at job start Sun Mar 29 2020 22:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47199 * 159.40744 * 3 2 1 5 5 N 1.46503 * 109.47167 * 175.03755 * 4 3 2 6 6 C 1.46497 * 119.99900 * 274.91826 * 5 4 3 7 7 C 1.50695 * 109.47320 * 89.99986 * 6 5 4 8 8 H 1.08001 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99650 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47254 * 60.00453 * 11 9 7 13 13 H 1.48507 * 109.47058 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47344 * 300.00282 * 11 9 7 15 15 C 1.34774 * 119.99651 * 94.91384 * 5 4 3 16 16 O 1.21278 * 120.00156 * 4.65883 * 15 5 4 17 17 C 1.50704 * 119.99820 * 184.65890 * 15 5 4 18 18 H 1.08996 * 113.03792 * 59.63233 * 17 15 5 19 19 C 1.54031 * 113.86223 * 287.65288 * 17 15 5 20 20 C 1.54039 * 85.82605 * 268.43190 * 19 17 15 21 21 O 1.44179 * 113.86396 * 191.61182 * 17 15 5 22 22 H 1.08994 * 109.46821 * 279.41212 * 3 2 1 23 23 H 1.08997 * 109.46820 * 39.40990 * 3 2 1 24 24 H 1.09000 * 109.47721 * 295.04414 * 4 3 2 25 25 H 1.09003 * 109.46745 * 55.04207 * 4 3 2 26 26 H 1.09008 * 109.46716 * 209.99726 * 6 5 4 27 27 H 1.08998 * 109.47485 * 329.99689 * 6 5 4 28 28 H 0.96998 * 119.99503 * 180.02562 * 10 9 7 29 29 H 1.09006 * 113.82110 * 22.65823 * 19 17 15 30 30 H 1.09000 * 113.81372 * 154.20689 * 19 17 15 31 31 H 1.09001 * 113.85758 * 91.56728 * 20 19 17 32 32 H 1.08994 * 113.86675 * 223.14397 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3512 -0.5073 5 7 4.5775 1.3955 -0.3961 6 6 5.2041 1.7939 0.8667 7 6 5.4279 0.5745 1.7233 8 1 5.1324 -0.4000 1.3632 9 6 6.0098 0.7026 2.9667 10 7 6.3691 1.8893 3.4053 11 14 6.2865 -0.8090 4.0287 12 1 7.1743 -1.7606 3.3136 13 1 6.9218 -0.4051 5.3088 14 1 4.9828 -1.4629 4.3083 15 6 5.3442 1.0696 -1.4555 16 8 4.8277 0.8216 -2.5245 17 6 6.8433 1.0132 -1.3119 18 1 7.1733 0.2923 -0.5639 19 6 7.5092 2.3959 -1.1811 20 6 7.6474 2.3495 -2.7146 21 8 7.5462 0.9148 -2.5668 22 1 2.9713 -0.1672 1.0138 23 1 2.9716 -0.7932 -0.6524 24 1 2.8283 1.4801 -1.5504 25 1 2.6829 2.1516 0.0916 26 1 6.1609 2.2745 0.6618 27 1 4.5520 2.4920 1.3916 28 1 6.7788 1.9793 4.2799 29 1 6.8373 3.1761 -0.8232 30 1 8.4622 2.3772 -0.6525 31 1 6.8086 2.7983 -3.2467 32 1 8.6160 2.6899 -3.0805 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181582928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:01 Heat of formation + Delta-G solvation = -37.546152 kcal Electronic energy + Delta-G solvation = -17110.462056 eV Core-core repulsion = 14265.091059 eV Total energy + Delta-G solvation = -2845.370997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94175 -39.73070 -37.87750 -36.79821 -34.59514 -32.76122 -30.56190 -29.09491 -28.26629 -25.10354 -24.89410 -22.28554 -19.93732 -18.98592 -18.27143 -17.82424 -17.49583 -17.19832 -16.63013 -16.31314 -15.81593 -15.72369 -15.25476 -14.49937 -14.24174 -13.98057 -13.77136 -13.53347 -13.33348 -13.19554 -12.94186 -12.76138 -12.53031 -12.19117 -12.05258 -11.79421 -11.70423 -11.54895 -11.32803 -10.49970 -10.22713 -9.54828 -8.11118 -6.22289 1.46887 1.50999 1.55647 1.59102 1.76998 1.78073 2.12931 2.49236 2.79052 3.15310 3.21815 3.37790 3.67271 4.12201 4.15727 4.18323 4.35449 4.56553 4.61352 4.78731 4.84951 4.90858 4.98000 5.07653 5.13074 5.15650 5.36732 5.74222 5.86072 6.14873 6.51391 6.54131 6.89490 7.25220 7.49546 8.94441 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.011794 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.690881 B = 2373.608763 C = 4011.618687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.124 3.876 5 N -0.586 5.586 6 C 0.238 3.762 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.030 3.970 10 N -0.916 5.916 11 Si 0.942 3.058 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.513 3.487 16 O -0.581 6.581 17 C 0.045 3.955 18 H 0.132 0.868 19 C -0.156 4.156 20 C 0.031 3.969 21 O -0.384 6.384 22 H 0.127 0.873 23 H 0.114 0.886 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 1.540 -4.897 5.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.078 4.078 4 C 0.000 4.000 5 N -0.317 5.317 6 C 0.118 3.882 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.171 4.171 10 N -0.555 5.555 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.301 3.699 16 O -0.462 6.462 17 C -0.016 4.016 18 H 0.150 0.850 19 C -0.193 4.193 20 C -0.045 4.045 21 O -0.302 6.302 22 H 0.145 0.855 23 H 0.132 0.868 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.812 1.304 -5.447 5.659 hybrid contribution 0.486 -0.684 1.078 1.366 sum 1.298 0.619 -4.369 4.599 Atomic orbital electron populations 1.81182 1.14101 1.10206 1.11219 1.29242 0.95040 0.91665 0.91154 1.19789 0.80058 1.01076 1.06868 1.21250 0.80083 0.96051 1.02638 1.48084 1.05807 1.64877 1.12959 1.19458 0.94325 0.95374 0.79068 1.21716 1.40469 0.94613 1.01206 0.91387 1.25468 0.95227 0.97694 0.98735 1.69974 1.41875 1.23643 1.20038 0.85856 0.78531 0.80597 0.78175 1.19732 1.21841 1.19818 1.20778 0.89810 0.75982 0.83295 1.90623 1.75575 1.51788 1.28246 1.23175 0.89211 1.01759 0.87496 0.85030 1.24512 1.02664 0.94824 0.97315 1.24224 1.03806 0.80685 0.95765 1.89780 1.73717 1.25422 1.41255 0.85544 0.86761 0.89668 0.88873 0.93397 0.95174 0.92604 0.90146 0.86494 0.90550 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.50 18.54 20.01 0.37 -16.13 16 2 C 0.25 7.22 15.43 89.45 1.38 8.60 16 3 C -0.04 -1.01 5.94 28.79 0.17 -0.84 16 4 C 0.12 3.67 5.49 86.38 0.47 4.14 16 5 N -0.59 -20.21 2.46 -826.15 -2.03 -22.24 16 6 C 0.24 9.27 4.95 85.63 0.42 9.70 16 7 C -0.54 -23.31 8.44 25.60 0.22 -23.09 16 8 H 0.07 2.86 7.31 -2.91 -0.02 2.83 16 9 C 0.03 1.37 5.46 84.66 0.46 1.83 16 10 N -0.92 -45.09 13.29 21.45 0.28 -44.80 16 11 Si 0.94 37.64 29.54 68.60 2.03 39.67 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 13 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 15 C 0.51 18.86 6.97 87.66 0.61 19.47 16 16 O -0.58 -24.12 16.26 12.45 0.20 -23.92 16 17 C 0.04 1.53 4.07 30.14 0.12 1.65 16 18 H 0.13 4.61 8.10 -2.39 -0.02 4.59 16 19 C -0.16 -4.32 6.64 31.29 0.21 -4.11 16 20 C 0.03 0.82 8.97 72.28 0.65 1.47 16 21 O -0.38 -13.31 12.04 -133.50 -1.61 -14.92 16 22 H 0.13 3.64 6.76 -2.39 -0.02 3.63 16 23 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 24 H 0.08 2.53 7.23 -2.39 -0.02 2.51 16 25 H 0.09 2.52 7.96 -2.39 -0.02 2.50 16 26 H 0.05 1.90 4.77 -2.38 -0.01 1.89 16 27 H 0.03 1.25 7.94 -2.39 -0.02 1.24 16 28 H 0.26 12.70 8.31 -92.71 -0.77 11.93 16 29 H 0.08 2.24 7.01 -2.38 -0.02 2.23 16 30 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -56.30 283.75 5.10 -51.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.13 Total: 12.33 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 4.72 Total: 18.82 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.38 Total: -83.18 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.40 Total: -38.84 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -56.30 5.10 -51.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181582928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.660 kcal (2) G-P(sol) polarization free energy of solvation -56.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds