Wall clock time and date at job start Sun Mar 29 2020 22:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08992 * 109.50437 * 110.53083 * 3 2 1 5 5 C 1.53098 * 109.54139 * 350.42042 * 3 2 1 6 6 O 1.43014 * 109.25675 * 183.19566 * 5 3 2 7 7 C 1.43018 * 113.73874 * 58.67451 * 6 5 3 8 8 C 1.53099 * 109.25400 * 301.32703 * 7 6 5 9 9 N 1.47009 * 109.25734 * 56.85201 * 8 7 6 10 10 C 1.46902 * 110.99715 * 177.60649 * 9 8 7 11 11 C 1.50702 * 109.47027 * 293.63172 * 10 9 8 12 12 O 1.21293 * 120.00255 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72353 * 11 10 9 14 14 C 1.37101 * 120.00327 * 180.27606 * 13 11 10 15 15 H 1.08001 * 119.99426 * 0.02562 * 14 13 11 16 16 C 1.38942 * 120.00412 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46646 * 60.00463 * 18 16 14 20 20 H 1.48504 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47259 * 300.00225 * 18 16 14 22 22 H 4.18794 * 15.02975 * 0.02562 * 4 2 1 23 23 H 1.09005 * 109.50892 * 303.13106 * 5 3 2 24 24 H 1.09002 * 109.50454 * 63.21837 * 5 3 2 25 25 H 1.08995 * 109.50677 * 61.26185 * 7 6 5 26 26 H 1.08998 * 109.50380 * 181.35390 * 7 6 5 27 27 H 1.08997 * 109.51084 * 296.91368 * 8 7 6 28 28 H 1.09002 * 109.50559 * 176.78597 * 8 7 6 29 29 H 1.09004 * 109.47131 * 173.63416 * 10 9 8 30 30 H 1.09000 * 109.47732 * 53.63527 * 10 9 8 31 31 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 32 32 H 0.96996 * 120.00330 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 0.3611 -0.9621 5 6 3.1588 -1.4218 0.2401 6 8 4.5869 -1.4023 0.3133 7 6 5.0990 -0.5561 1.3463 8 6 4.6059 0.8751 1.1174 9 7 3.1365 0.8801 1.0712 10 6 2.6196 2.2456 0.9092 11 6 2.9355 3.0518 2.1427 12 8 3.5329 2.5395 3.0656 13 7 2.5595 4.3439 2.2177 14 6 2.8518 5.0790 3.3375 15 1 3.3837 4.6227 4.1592 16 6 2.4638 6.4109 3.4151 17 7 1.8161 6.9659 2.4154 18 14 2.8615 7.4122 4.9411 19 1 4.3331 7.4555 5.1350 20 1 2.3427 8.7938 4.7756 21 1 2.2243 6.7833 6.1258 22 1 -1.0500 0.0003 0.0005 23 1 2.7515 -1.8023 1.1769 24 1 2.8445 -2.0655 -0.5815 25 1 4.7481 -0.9114 2.3151 26 1 6.1886 -0.5742 1.3247 27 1 5.0010 1.2496 0.1731 28 1 4.9465 1.5123 1.9334 29 1 1.5397 2.2106 0.7648 30 1 3.0873 2.7107 0.0415 31 1 2.0820 4.7538 1.4796 32 1 1.5448 7.8956 2.4696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195029213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:41 Heat of formation + Delta-G solvation = -35.080730 kcal Electronic energy + Delta-G solvation = -16851.513931 eV Core-core repulsion = 14006.249842 eV Total energy + Delta-G solvation = -2845.264089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09944 -39.74400 -36.93570 -35.92831 -34.31934 -33.31442 -31.40921 -30.36028 -27.33973 -25.46214 -25.36193 -21.96641 -21.14272 -19.94095 -19.25720 -17.92587 -17.29890 -17.16624 -16.63964 -16.55463 -16.06724 -15.83465 -15.52201 -15.32428 -14.75717 -14.11583 -13.67204 -13.62115 -13.41479 -12.97497 -12.59167 -12.45346 -12.41437 -12.12856 -11.95295 -11.51509 -11.42307 -11.32810 -10.77003 -10.26482 -10.02950 -9.39987 -8.47976 -5.97313 1.38992 1.41211 1.52164 1.66261 1.83037 2.00280 2.27873 2.69151 2.85101 3.17650 3.26718 3.44198 3.85706 3.99318 4.05573 4.17418 4.22201 4.34214 4.40982 4.48534 4.69236 4.75249 4.88174 4.94190 5.05095 5.39038 5.70740 5.89449 6.00647 6.08878 6.57139 6.64609 7.09961 7.52070 8.07103 8.69302 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036852 B = 0.005812 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.606366 B = 4816.477383 C = 5353.560504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.221 4.221 3 C 0.157 3.843 4 H 0.075 0.925 5 C 0.079 3.921 6 O -0.389 6.389 7 C 0.071 3.929 8 C 0.017 3.983 9 N -0.525 5.525 10 C 0.059 3.941 11 C 0.443 3.557 12 O -0.611 6.611 13 N -0.572 5.572 14 C -0.334 4.334 15 H 0.081 0.919 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.995 3.005 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.272 1.272 22 H 0.252 0.748 23 H 0.058 0.942 24 H 0.128 0.872 25 H 0.054 0.946 26 H 0.124 0.876 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.395 0.605 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -11.777 -7.350 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.221 4.221 3 C 0.050 3.950 4 H 0.093 0.907 5 C 0.002 3.998 6 O -0.307 6.307 7 C -0.006 4.006 8 C -0.111 4.111 9 N -0.251 5.251 10 C -0.072 4.072 11 C 0.231 3.769 12 O -0.497 6.497 13 N -0.209 5.209 14 C -0.464 4.464 15 H 0.099 0.901 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.818 3.182 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.197 1.197 22 H 0.268 0.732 23 H 0.076 0.924 24 H 0.146 0.854 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.231 -12.213 -6.443 13.811 hybrid contribution -0.252 1.551 -0.184 1.582 sum -0.022 -10.662 -6.627 12.554 Atomic orbital electron populations 1.25750 0.96602 0.97618 0.98276 1.22694 0.94101 1.02955 1.02387 1.19322 0.85915 0.96027 0.93743 0.90740 1.22698 0.80519 0.93108 1.03452 1.87956 1.20685 1.66701 1.55347 1.22721 1.00146 0.87095 0.90642 1.22937 0.86404 0.99891 1.01826 1.61823 1.09784 1.08256 1.45246 1.21714 1.01937 0.88711 0.94861 1.20534 0.83803 0.82538 0.90068 1.90448 1.46357 1.71216 1.41695 1.41914 1.51435 1.09308 1.18216 1.19648 1.36262 0.93548 0.96902 0.90094 1.26065 0.96066 0.97495 1.01592 1.69671 1.38982 1.14784 1.32741 0.84966 0.78728 0.77079 0.77425 1.19562 1.19475 1.19726 0.73167 0.92396 0.85419 0.92728 0.85858 0.93689 0.89741 0.88146 0.91541 0.77140 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 19.25 74.32 1.43 -2.27 16 2 C -0.22 -5.93 11.09 31.13 0.35 -5.59 16 3 C 0.16 4.36 2.44 43.12 0.11 4.46 16 4 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 5 C 0.08 1.91 6.25 72.01 0.45 2.36 16 6 O -0.39 -10.26 10.83 -148.98 -1.61 -11.87 16 7 C 0.07 1.91 7.01 72.02 0.50 2.42 16 8 C 0.02 0.56 5.29 86.32 0.46 1.01 16 9 N -0.53 -18.25 4.25 -885.22 -3.76 -22.01 16 10 C 0.06 2.20 5.26 85.56 0.45 2.65 16 11 C 0.44 21.63 7.49 87.66 0.66 22.28 16 12 O -0.61 -33.77 13.92 -3.07 -0.04 -33.81 16 13 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 14 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 15 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 16 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 17 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 18 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H 0.25 3.50 7.80 -4.42 -0.03 3.46 16 23 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.12 2.67 8.14 -2.39 -0.02 2.66 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.08 3.37 5.88 -2.39 -0.01 3.36 16 29 H 0.10 3.58 6.70 -2.38 -0.02 3.56 16 30 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 31 H 0.39 19.74 7.90 -92.71 -0.73 19.01 16 32 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -67.27 278.19 1.35 -65.92 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.40 Total: 29.12 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.68 Total: 8.88 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -5.10 Total: -103.17 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.66 Total: -45.68 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.27 1.35 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195029213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.840 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds