Wall clock time and date at job start Sun Mar 29 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 C 1.50700 * 109.46791 * 119.99954 * 2 1 3 5 5 O 1.33521 * 126.83587 * 299.68493 * 4 2 1 6 6 N 1.20662 * 113.15812 * 179.78608 * 5 4 2 7 7 C 1.30011 * 112.32131 * 0.49960 * 6 5 4 8 8 C 1.37427 * 126.83932 * 120.00722 * 4 2 1 9 9 C 1.47326 * 128.56575 * 0.02562 * 8 4 2 10 10 O 1.21632 * 119.99853 * 354.19213 * 9 8 4 11 11 N 1.34772 * 119.99930 * 174.19268 * 9 8 4 12 12 C 1.46507 * 119.99663 * 4.73594 * 11 9 8 13 13 C 1.36965 * 120.00310 * 184.73795 * 11 9 8 14 14 H 1.08000 * 119.99870 * 22.76887 * 13 11 9 15 15 C 1.38983 * 120.00418 * 202.77183 * 13 11 9 16 16 N 1.31405 * 120.00054 * 219.04075 * 15 13 11 17 17 Si 1.86805 * 119.99687 * 39.03812 * 15 13 11 18 18 H 1.48495 * 109.46934 * 93.98824 * 17 15 13 19 19 H 1.48500 * 109.46682 * 213.98852 * 17 15 13 20 20 H 1.48505 * 109.47208 * 333.98778 * 17 15 13 21 21 H 1.08999 * 109.47084 * 60.00114 * 1 2 3 22 22 H 1.09002 * 109.47303 * 299.99929 * 1 2 3 23 23 H 1.08995 * 109.47037 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47161 * 239.99342 * 2 1 3 25 25 H 1.08999 * 109.47501 * 60.00183 * 3 2 1 26 26 H 1.09000 * 109.46885 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47137 * 299.99854 * 3 2 1 28 28 H 1.07999 * 127.33570 * 179.68266 * 7 6 5 29 29 H 1.08997 * 109.47533 * 61.89956 * 12 11 9 30 30 H 1.09004 * 109.46761 * 181.89856 * 12 11 9 31 31 H 1.08999 * 109.47250 * 301.89999 * 12 11 9 32 32 H 0.97000 * 119.99748 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.8001 -0.3719 2.5010 6 7 2.3207 -1.1181 3.2936 7 6 2.9917 -2.0672 2.7111 8 6 2.8255 -1.8320 1.2683 9 6 3.3744 -2.6071 0.1421 10 8 3.0517 -2.3343 -0.9985 11 7 4.2342 -3.6184 0.3756 12 6 4.5426 -4.0144 1.7520 13 6 4.8195 -4.2759 -0.6737 14 1 4.9029 -3.7916 -1.6354 15 6 5.3061 -5.5662 -0.5009 16 7 6.4318 -5.9263 -1.0753 17 14 4.3599 -6.7886 0.5480 18 1 3.4676 -7.5986 -0.3196 19 1 5.3156 -7.6838 1.2483 20 1 3.5445 -6.0549 1.5490 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.5521 -2.8592 3.1854 29 1 3.6326 -4.3579 2.2439 30 1 5.2767 -4.8202 1.7424 31 1 4.9481 -3.1599 2.2938 32 1 6.7716 -6.8268 -0.9544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199747349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:39 Heat of formation + Delta-G solvation = 43.324038 kcal Electronic energy + Delta-G solvation = -17335.577252 eV Core-core repulsion = 14493.713049 eV Total energy + Delta-G solvation = -2841.864203 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.46185 -38.63952 -35.87968 -34.76618 -33.35491 -32.09858 -30.40396 -27.08171 -26.89279 -25.84106 -23.48961 -22.79766 -20.61863 -18.82924 -17.35519 -17.26684 -16.79100 -15.99421 -15.50476 -14.70581 -14.33633 -14.05022 -13.72828 -13.52018 -13.11803 -12.72316 -12.44056 -12.28862 -12.14172 -11.56239 -11.46280 -11.18315 -11.16144 -10.84534 -10.63521 -10.48788 -9.97662 -9.90174 -9.16021 -8.92822 -8.68589 -8.03638 -6.69469 -3.92019 1.60097 2.22390 3.01722 3.14863 3.21892 3.27471 4.00188 4.03372 4.24208 4.67481 4.75016 4.94939 5.07084 5.12996 5.21926 5.49169 5.62990 5.68578 5.76458 5.86400 5.87164 5.98124 6.01779 6.13647 6.20250 6.27371 6.31409 6.53506 7.29978 8.09428 8.31783 8.56023 8.82953 9.18125 9.67974 10.40259 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.007801 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.794098 B = 3588.458552 C = 3986.320765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.019 3.981 5 O 0.086 5.914 6 N -0.369 5.369 7 C -0.009 4.009 8 C -0.220 4.220 9 C 0.513 3.487 10 O -0.571 6.571 11 N -0.436 5.436 12 C 0.061 3.939 13 C -0.329 4.329 14 H 0.115 0.885 15 C 0.070 3.930 16 N -0.823 5.823 17 Si 0.847 3.153 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.253 1.253 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.131 0.869 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.206 0.794 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 7.775 6.235 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.045 4.045 5 O 0.024 5.976 6 N -0.075 5.075 7 C -0.190 4.190 8 C -0.228 4.228 9 C 0.303 3.697 10 O -0.456 6.456 11 N -0.154 5.154 12 C -0.082 4.082 13 C -0.455 4.455 14 H 0.132 0.868 15 C -0.140 4.140 16 N -0.456 5.456 17 Si 0.671 3.329 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.177 1.177 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.149 0.851 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.222 0.778 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.197 8.074 6.888 12.822 hybrid contribution 0.019 -1.482 0.044 1.483 sum -7.178 6.592 6.932 11.959 Atomic orbital electron populations 1.21833 0.93609 1.02514 1.02214 1.20120 0.96242 0.95897 0.91950 1.21844 1.01716 0.94433 1.02255 1.24619 0.97700 0.95428 0.86764 1.84431 1.56452 1.43712 1.12959 1.73585 1.12338 1.04962 1.16616 1.27162 1.00720 0.99773 0.91309 1.22541 1.05996 0.99964 0.94262 1.16488 0.82065 0.84647 0.86480 1.90589 1.62223 1.70932 1.21871 1.43489 1.36906 1.29637 1.05355 1.22499 1.00231 1.00388 0.85128 1.19086 1.34368 0.98250 0.93762 0.86786 1.25215 0.94439 0.97634 0.96732 1.70030 1.14079 1.20046 1.41469 0.87538 0.81955 0.82102 0.81283 1.20254 1.20596 1.17718 0.91467 0.92399 0.92192 0.85097 0.92363 0.92188 0.91456 0.77763 0.92606 0.90566 0.92508 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 2 C -0.02 -0.34 3.29 -91.77 -0.30 -0.64 16 3 C -0.15 -1.77 9.18 37.16 0.34 -1.43 16 4 C 0.02 0.34 6.06 -34.60 -0.21 0.13 16 5 O 0.09 1.43 11.06 18.58 0.21 1.64 16 6 N -0.37 -6.39 12.01 31.82 0.38 -6.01 16 7 C -0.01 -0.15 10.24 -14.72 -0.15 -0.30 16 8 C -0.22 -4.36 6.29 -102.89 -0.65 -5.01 16 9 C 0.51 12.23 7.61 -12.57 -0.10 12.13 16 10 O -0.57 -15.03 14.61 5.25 0.08 -14.96 16 11 N -0.44 -10.56 2.79 -123.45 -0.34 -10.90 16 12 C 0.06 1.20 6.44 59.85 0.39 1.58 16 13 C -0.33 -9.04 9.46 -14.98 -0.14 -9.18 16 14 H 0.11 3.50 7.66 -52.49 -0.40 3.10 16 15 C 0.07 1.83 4.79 -17.46 -0.08 1.75 16 16 N -0.82 -22.39 13.96 55.50 0.77 -21.61 16 17 Si 0.85 18.94 26.32 -169.99 -4.47 14.47 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.25 -5.27 5.01 56.52 0.28 -4.99 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.13 2.32 5.91 -51.93 -0.31 2.01 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.21 3.03 4.83 -52.49 -0.25 2.78 16 29 H 0.06 0.99 5.70 -51.93 -0.30 0.70 16 30 H 0.08 1.51 5.00 -51.93 -0.26 1.25 16 31 H 0.06 0.96 6.25 -51.93 -0.32 0.63 16 32 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -30.12 265.01 -3.58 -33.70 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.63 Total: 2.08 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.56 Total: -2.40 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.81 Total: -38.53 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.28 Total: -13.32 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.47 Total: 14.47 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.12 -3.58 -33.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199747349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.027 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds