Wall clock time and date at job start Sun Mar 29 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 C 1.50700 * 109.46791 * 119.99954 * 2 1 3 5 5 O 1.33521 * 126.83587 * 299.68493 * 4 2 1 6 6 N 1.20662 * 113.15812 * 179.78608 * 5 4 2 7 7 C 1.30011 * 112.32131 * 0.49960 * 6 5 4 8 8 C 1.37427 * 126.83932 * 120.00722 * 4 2 1 9 9 C 1.47326 * 128.56575 * 0.02562 * 8 4 2 10 10 O 1.21632 * 119.99853 * 354.19213 * 9 8 4 11 11 N 1.34772 * 119.99930 * 174.19268 * 9 8 4 12 12 C 1.46507 * 119.99663 * 4.73594 * 11 9 8 13 13 C 1.36965 * 120.00310 * 184.73795 * 11 9 8 14 14 H 1.08000 * 119.99870 * 22.76887 * 13 11 9 15 15 C 1.38983 * 120.00418 * 202.77183 * 13 11 9 16 16 N 1.31405 * 120.00054 * 219.04075 * 15 13 11 17 17 Si 1.86805 * 119.99687 * 39.03812 * 15 13 11 18 18 H 1.48495 * 109.46934 * 93.98824 * 17 15 13 19 19 H 1.48500 * 109.46682 * 213.98852 * 17 15 13 20 20 H 1.48505 * 109.47208 * 333.98778 * 17 15 13 21 21 H 1.08999 * 109.47084 * 60.00114 * 1 2 3 22 22 H 1.09002 * 109.47303 * 299.99929 * 1 2 3 23 23 H 1.08995 * 109.47037 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47161 * 239.99342 * 2 1 3 25 25 H 1.08999 * 109.47501 * 60.00183 * 3 2 1 26 26 H 1.09000 * 109.46885 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47137 * 299.99854 * 3 2 1 28 28 H 1.07999 * 127.33570 * 179.68266 * 7 6 5 29 29 H 1.08997 * 109.47533 * 61.89956 * 12 11 9 30 30 H 1.09004 * 109.46761 * 181.89856 * 12 11 9 31 31 H 1.08999 * 109.47250 * 301.89999 * 12 11 9 32 32 H 0.97000 * 119.99748 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.8001 -0.3719 2.5010 6 7 2.3207 -1.1181 3.2936 7 6 2.9917 -2.0672 2.7111 8 6 2.8255 -1.8320 1.2683 9 6 3.3744 -2.6071 0.1421 10 8 3.0517 -2.3343 -0.9985 11 7 4.2342 -3.6184 0.3756 12 6 4.5426 -4.0144 1.7520 13 6 4.8195 -4.2759 -0.6737 14 1 4.9029 -3.7916 -1.6354 15 6 5.3061 -5.5662 -0.5009 16 7 6.4318 -5.9263 -1.0753 17 14 4.3599 -6.7886 0.5480 18 1 3.4676 -7.5986 -0.3196 19 1 5.3156 -7.6838 1.2483 20 1 3.5445 -6.0549 1.5490 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.5521 -2.8592 3.1854 29 1 3.6326 -4.3579 2.2439 30 1 5.2767 -4.8202 1.7424 31 1 4.9481 -3.1599 2.2938 32 1 6.7716 -6.8268 -0.9544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199747349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:39 Heat of formation + Delta-G solvation = 23.209155 kcal Electronic energy + Delta-G solvation = -17336.449498 eV Core-core repulsion = 14493.713049 eV Total energy + Delta-G solvation = -2842.736450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.86504 -40.45914 -37.26071 -36.46367 -34.91981 -33.96666 -31.78051 -28.58317 -28.05770 -27.65392 -25.02045 -24.19771 -22.04386 -20.43398 -19.23303 -18.66583 -18.42986 -17.47310 -17.23893 -16.17513 -15.88312 -15.82202 -15.29424 -14.71717 -14.56111 -14.24107 -14.20324 -13.98564 -13.19565 -13.03531 -12.81103 -12.66525 -12.40995 -12.32374 -12.22263 -11.74163 -11.62935 -11.40962 -11.04350 -10.56390 -10.39577 -9.95953 -8.69210 -5.99823 0.13664 0.80154 1.23810 1.38465 1.44399 1.84753 2.11961 2.24504 2.55525 2.97171 3.36075 3.38083 3.68396 3.90674 4.10871 4.14112 4.25833 4.34908 4.49060 4.64516 4.67888 4.79499 4.84580 4.92519 4.94490 5.15204 5.32999 5.37471 5.39953 5.98149 6.39528 6.85505 7.15403 7.22872 7.79332 8.46004 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.007801 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.794098 B = 3588.458552 C = 3986.320765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.140 4.140 4 C 0.045 3.955 5 O 0.094 5.906 6 N -0.371 5.371 7 C 0.008 3.992 8 C -0.260 4.260 9 C 0.513 3.487 10 O -0.610 6.610 11 N -0.449 5.449 12 C 0.054 3.946 13 C -0.361 4.361 14 H 0.057 0.943 15 C 0.034 3.966 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.288 1.288 19 H -0.261 1.261 20 H -0.224 1.224 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 8.207 8.977 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.020 4.020 5 O 0.035 5.965 6 N -0.077 5.077 7 C -0.173 4.173 8 C -0.268 4.268 9 C 0.304 3.696 10 O -0.498 6.498 11 N -0.167 5.167 12 C -0.088 4.088 13 C -0.487 4.487 14 H 0.075 0.925 15 C -0.174 4.174 16 N -0.501 5.501 17 Si 0.740 3.260 18 H -0.215 1.215 19 H -0.186 1.186 20 H -0.147 1.147 21 H 0.109 0.891 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.248 0.752 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.745 8.522 9.664 15.572 hybrid contribution 0.490 -1.464 -0.877 1.776 sum -8.254 7.058 8.787 13.970 Atomic orbital electron populations 1.21824 0.91116 1.02297 1.04338 1.20252 0.98272 0.96959 0.89483 1.21837 1.00800 0.92659 1.04384 1.25084 0.95185 0.94113 0.87627 1.84459 1.56185 1.43468 1.12390 1.73587 1.12588 1.05042 1.16513 1.27439 1.00099 0.99985 0.89776 1.22201 1.08596 1.01541 0.94445 1.17033 0.81300 0.84209 0.87077 1.90558 1.63405 1.71860 1.23963 1.43528 1.37119 1.29700 1.06385 1.22760 1.01498 1.01694 0.82895 1.18641 1.37074 0.99638 0.93355 0.92542 1.25913 0.94340 0.98551 0.98581 1.70068 1.15390 1.20922 1.43696 0.86421 0.80483 0.79124 0.79985 1.21527 1.18592 1.14694 0.89149 0.90516 0.93579 0.88361 0.90477 0.93640 0.89130 0.75187 0.90022 0.90859 0.89646 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.18 71.98 0.66 -2.42 16 2 C -0.03 -0.87 3.29 -11.54 -0.04 -0.90 16 3 C -0.14 -3.11 9.18 71.98 0.66 -2.45 16 4 C 0.04 1.49 6.06 25.49 0.15 1.64 16 5 O 0.09 2.87 11.06 76.73 0.85 3.72 16 6 N -0.37 -11.62 12.01 -54.13 -0.65 -12.27 16 7 C 0.01 0.27 10.24 87.30 0.89 1.16 16 8 C -0.26 -10.02 6.29 -18.74 -0.12 -10.14 16 9 C 0.51 24.90 7.61 86.64 0.66 25.56 16 10 O -0.61 -33.79 14.61 -4.13 -0.06 -33.85 16 11 N -0.45 -21.96 2.79 -662.73 -1.85 -23.81 16 12 C 0.05 1.97 6.44 127.77 0.82 2.80 16 13 C -0.36 -20.75 9.46 84.07 0.79 -19.95 16 14 H 0.06 3.79 7.66 -2.91 -0.02 3.77 16 15 C 0.03 1.80 4.79 84.94 0.41 2.21 16 16 N -0.87 -48.50 13.96 21.67 0.30 -48.20 16 17 Si 0.92 38.63 26.32 68.60 1.81 40.43 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.22 -8.30 5.01 99.48 0.50 -7.80 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 3.57 5.91 -2.39 -0.01 3.55 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.23 5.82 4.83 -2.91 -0.01 5.81 16 29 H 0.08 2.56 5.70 -2.39 -0.01 2.55 16 30 H 0.07 2.73 5.00 -2.38 -0.01 2.72 16 31 H 0.09 2.62 6.25 -2.39 -0.01 2.61 16 32 H 0.29 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -69.00 265.01 6.23 -62.77 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.93 Total: 13.70 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.90 Total: -2.50 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.20 Total: -84.27 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: 0.79 Total: -30.13 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.81 Total: 40.43 kcal Total: -69.00 6.23 -62.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199747349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.983 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds