Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99667 * 2 1 4 4 H 1.48497 * 109.47444 * 274.98430 * 3 2 1 5 5 H 1.48503 * 109.47563 * 34.98673 * 3 2 1 6 6 H 1.48507 * 109.46950 * 154.98702 * 3 2 1 7 7 C 1.38807 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99632 * 187.32747 * 7 2 1 9 9 N 1.36938 * 120.00664 * 7.05491 * 7 2 1 10 10 C 1.47020 * 125.64279 * 354.45052 * 9 7 2 11 11 C 1.54337 * 107.26188 * 178.85271 * 10 9 7 12 12 C 1.55156 * 103.02071 * 338.14293 * 11 10 9 13 13 H 1.09007 * 111.00015 * 277.23292 * 12 11 10 14 14 O 1.42904 * 111.03885 * 153.40036 * 12 11 10 15 15 C 1.42894 * 114.00235 * 156.33007 * 14 12 11 16 16 C 1.50700 * 109.47082 * 179.97438 * 15 14 12 17 17 C 1.35453 * 126.77316 * 89.70675 * 16 15 14 18 18 C 1.41380 * 103.98533 * 179.90846 * 17 16 15 19 19 N 1.30186 * 106.39481 * 0.36227 * 18 17 16 20 20 O 1.20926 * 111.60039 * 359.76801 * 19 18 17 21 21 C 1.47421 * 125.64834 * 174.76498 * 9 7 2 22 22 H 0.96998 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.88679 * 298.39665 * 10 9 7 24 24 H 1.08999 * 109.88326 * 59.56755 * 10 9 7 25 25 H 1.09004 * 110.84688 * 219.67396 * 11 10 9 26 26 H 1.09000 * 110.66579 * 96.52587 * 11 10 9 27 27 H 1.08993 * 109.47234 * 299.99604 * 15 14 12 28 28 H 1.08999 * 109.47023 * 59.99751 * 15 14 12 29 29 H 1.07993 * 128.01111 * 0.02562 * 17 16 15 30 30 H 1.07994 * 126.81000 * 180.09410 * 18 17 16 31 31 H 1.09002 * 110.36891 * 322.92153 * 21 9 7 32 32 H 1.08992 * 110.36935 * 85.14368 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3334 -2.3837 -0.1446 10 6 -0.1284 -2.5332 -0.1940 11 6 -0.4288 -4.0336 -0.3954 12 6 0.8905 -4.5753 -1.0064 13 1 0.9239 -4.3998 -2.0817 14 8 1.0608 -5.9631 -0.7112 15 6 1.9092 -6.6532 -1.6309 16 6 2.0176 -8.1005 -1.2254 17 6 1.2116 -9.1155 -1.6191 18 6 1.7429 -10.2485 -0.9612 19 7 2.7590 -9.8265 -0.2652 20 8 2.9269 -8.6365 -0.3993 21 6 1.9496 -3.7170 -0.2706 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5683 -2.1873 0.7414 24 1 -0.5315 -1.9610 -1.0296 25 1 -1.2599 -4.1734 -1.0866 26 1 -0.6379 -4.5156 0.5597 27 1 1.4876 -6.5872 -2.6338 28 1 2.8998 -6.1986 -1.6226 29 1 0.3614 -9.0702 -2.2833 30 1 1.3759 -11.2624 -1.0204 31 1 2.8652 -3.6577 -0.8590 32 1 2.1590 -4.1328 0.7149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222727050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = 50.017034 kcal Electronic energy + Delta-G solvation = -16530.571497 eV Core-core repulsion = 13688.997525 eV Total energy + Delta-G solvation = -2841.573973 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.01690 -38.52262 -36.12550 -34.00114 -32.72226 -31.87603 -29.25555 -27.42736 -26.42021 -24.28027 -23.59603 -21.55176 -20.41123 -20.11341 -17.76002 -17.59251 -16.95003 -16.41840 -15.38191 -15.18179 -14.65461 -14.07799 -13.85374 -13.52482 -13.16861 -12.60533 -12.31578 -11.93730 -11.65310 -11.51597 -10.99784 -10.95985 -10.77481 -10.59300 -10.28617 -10.10719 -9.90978 -9.74719 -9.59495 -9.24389 -8.59407 -6.86130 -5.74638 -3.07673 1.25340 2.12604 2.88131 3.39671 3.44997 3.47123 3.96062 4.21810 4.46901 4.54747 4.91158 5.05177 5.14305 5.34488 5.41266 5.44036 5.52084 5.55768 5.69697 5.78780 5.86564 6.19516 6.41976 6.48925 6.62040 6.66329 7.42720 7.52736 7.59031 7.79904 8.10535 8.22844 9.18946 9.79273 10.44828 11.37510 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.061244 B = 0.004518 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.080056 B = 6195.646496 C = 6493.446185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.177 3.823 11 C -0.136 4.136 12 C 0.072 3.928 13 H 0.072 0.928 14 O -0.373 6.373 15 C 0.140 3.860 16 C -0.020 4.020 17 C -0.218 4.218 18 C -0.015 4.015 19 N -0.365 5.365 20 O 0.106 5.894 21 C 0.116 3.884 22 H 0.253 0.747 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.191 0.809 31 H 0.040 0.960 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -15.439 -5.595 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.175 4.175 12 C 0.014 3.986 13 H 0.090 0.910 14 O -0.292 6.292 15 C 0.062 3.938 16 C -0.084 4.084 17 C -0.239 4.239 18 C -0.193 4.193 19 N -0.067 5.067 20 O 0.038 5.962 21 C -0.011 4.011 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.191 0.809 30 H 0.208 0.792 31 H 0.058 0.942 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.466 -15.902 -4.592 16.617 hybrid contribution -0.214 1.009 -0.710 1.252 sum 1.252 -14.894 -5.303 15.859 Atomic orbital electron populations 1.69969 1.04947 1.25146 1.56702 1.24830 0.95715 0.97707 1.02027 0.86097 0.78714 0.83467 0.77501 1.21578 1.21730 1.20580 1.19077 0.91232 0.82386 1.43176 0.90308 1.44355 1.01696 1.00784 1.86334 1.21203 0.84556 0.87792 1.01222 1.22989 0.94852 0.99147 1.00475 1.23518 0.98001 0.78291 0.98756 0.91026 1.87961 1.67265 1.22557 1.51402 1.20646 0.96853 0.83377 0.92922 1.24265 0.91859 0.97332 0.94905 1.22633 1.03351 0.91382 1.06580 1.25067 0.94743 1.02044 0.97459 1.73909 1.19636 0.92833 1.20332 1.84841 1.45110 1.16305 1.49952 1.21955 0.94571 0.87101 0.97425 0.93683 0.93705 0.93033 0.91681 0.91432 0.89766 0.90633 0.80889 0.79194 0.94180 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.36 55.49 0.57 -26.26 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 10 C 0.18 4.27 5.39 -3.06 -0.02 4.25 16 11 C -0.14 -2.57 6.69 -24.89 -0.17 -2.73 16 12 C 0.07 1.26 3.49 -24.58 -0.09 1.18 16 13 H 0.07 1.15 7.90 -51.92 -0.41 0.74 16 14 O -0.37 -5.90 10.14 -35.23 -0.36 -6.26 16 15 C 0.14 1.67 6.38 36.01 0.23 1.90 16 16 C -0.02 -0.24 7.12 -35.30 -0.25 -0.49 16 17 C -0.22 -2.25 11.09 -39.38 -0.44 -2.68 16 18 C -0.02 -0.16 12.17 -17.05 -0.21 -0.37 16 19 N -0.36 -4.95 12.07 30.36 0.37 -4.59 16 20 O 0.11 1.48 11.20 17.19 0.19 1.67 16 21 C 0.12 2.43 6.97 -2.53 -0.02 2.41 16 22 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.04 1.20 7.63 -51.93 -0.40 0.80 16 24 H 0.05 1.35 7.28 -51.93 -0.38 0.97 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.19 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 276.97 15.07 4.17 4.17 Total: -1.00 -31.53 276.97 -5.97 -37.49 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -4.11 Total: -3.69 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.20 Total: -3.40 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.36 Total: -46.89 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.16 Total: -4.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.53 -5.97 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222727050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.509 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds