Wall clock time and date at job start Sun Mar 29 2020 22:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64724 * 359.68939 * 9 7 2 11 11 C 1.54337 * 107.26147 * 178.85267 * 10 9 7 12 12 C 1.55150 * 103.02027 * 338.13566 * 11 10 9 13 13 H 1.08997 * 111.00858 * 277.23433 * 12 11 10 14 14 O 1.42902 * 111.03459 * 153.39867 * 12 11 10 15 15 C 1.42900 * 114.00159 * 156.33093 * 14 12 11 16 16 C 1.50698 * 109.47603 * 179.97438 * 15 14 12 17 17 C 1.41381 * 126.79781 * 359.71162 * 16 15 14 18 18 C 1.35454 * 103.98612 * 179.88569 * 17 16 15 19 19 O 1.34043 * 106.44175 * 0.37288 * 18 17 16 20 20 N 1.20920 * 111.57016 * 359.74426 * 19 18 17 21 21 C 1.47426 * 125.64579 * 179.97438 * 9 7 2 22 22 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88145 * 298.39368 * 10 9 7 24 24 H 1.08997 * 109.88249 * 59.56209 * 10 9 7 25 25 H 1.09007 * 110.84502 * 219.66866 * 11 10 9 26 26 H 1.09003 * 110.67176 * 96.52401 * 11 10 9 27 27 H 1.08994 * 109.47355 * 300.00440 * 15 14 12 28 28 H 1.09009 * 109.46932 * 59.99909 * 15 14 12 29 29 H 1.07994 * 128.00790 * 0.02562 * 17 16 15 30 30 H 1.07996 * 126.78040 * 180.09455 * 18 17 16 31 31 H 1.09000 * 110.36316 * 322.92674 * 21 9 7 32 32 H 1.08994 * 110.36888 * 85.14224 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0065 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8517 -4.6562 -0.6104 13 1 0.8564 -4.5966 -1.6988 14 8 1.0252 -6.0056 -0.1734 15 6 1.8457 -6.7952 -1.0367 16 6 1.9603 -8.1918 -0.4821 17 6 1.3702 -8.6825 0.7053 18 6 1.7666 -9.9767 0.7572 19 8 2.5311 -10.1830 -0.3243 20 7 2.6267 -9.1837 -0.9983 21 6 1.9334 -3.7312 0.0005 22 1 -0.4849 0.8400 -0.0004 23 1 -0.5505 -2.0864 0.9111 24 1 -0.5613 -2.0502 -0.8742 25 1 -1.2987 -4.2516 -0.6752 26 1 -0.6331 -4.4203 0.9808 27 1 1.3972 -6.8338 -2.0293 28 1 2.8379 -6.3487 -1.1035 29 1 0.7459 -8.1496 1.4071 30 1 1.5195 -10.6985 1.5216 31 1 2.8326 -3.7405 -0.6155 32 1 2.1687 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222729426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:39 Heat of formation + Delta-G solvation = 28.233112 kcal Electronic energy + Delta-G solvation = -16520.341241 eV Core-core repulsion = 13677.822646 eV Total energy + Delta-G solvation = -2842.518595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.91744 -39.99424 -37.79135 -35.19176 -34.06981 -32.65197 -31.16939 -29.22108 -28.10352 -26.24491 -23.99196 -22.34736 -22.06971 -21.66826 -19.04008 -18.84629 -18.60821 -17.80696 -16.70154 -16.54603 -16.13303 -15.71212 -15.36175 -14.83281 -14.19859 -14.03733 -13.96172 -13.64590 -13.11044 -12.89846 -12.77860 -12.54142 -12.30577 -12.08140 -12.06034 -11.80776 -11.48095 -11.19224 -10.72041 -10.61279 -10.42677 -8.94348 -7.86985 -5.24008 0.60611 1.26924 1.46314 1.49706 1.56084 2.13661 2.48407 2.53005 3.31390 3.41040 3.70245 3.78751 3.82430 4.02079 4.14320 4.19320 4.31538 4.39709 4.56393 4.62061 4.72045 4.81408 4.93359 5.01567 5.05069 5.16462 5.42129 5.61977 5.71786 6.09214 6.20926 7.07359 7.31085 7.73106 8.37131 9.23173 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062492 B = 0.004450 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.947037 B = 6289.949580 C = 6534.739396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.122 4.122 12 C 0.093 3.907 13 H 0.082 0.918 14 O -0.372 6.372 15 C 0.139 3.861 16 C -0.002 4.002 17 C -0.231 4.231 18 C -0.038 4.038 19 O 0.096 5.904 20 N -0.391 5.391 21 C 0.113 3.887 22 H 0.249 0.751 23 H 0.012 0.988 24 H 0.020 0.980 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.182 0.818 30 H 0.268 0.732 31 H 0.044 0.956 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -18.566 0.890 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.160 4.160 12 C 0.034 3.966 13 H 0.100 0.900 14 O -0.290 6.290 15 C 0.062 3.938 16 C -0.159 4.159 17 C -0.252 4.252 18 C -0.119 4.119 19 O 0.030 5.970 20 N -0.098 5.098 21 C -0.013 4.013 22 H 0.058 0.942 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.199 0.801 30 H 0.284 0.716 31 H 0.062 0.938 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.752 -18.559 -0.048 18.641 hybrid contribution -0.102 1.656 0.546 1.746 sum 1.651 -16.903 0.497 16.990 Atomic orbital electron populations 1.70158 1.06292 1.25569 1.57840 1.25673 0.96664 1.01038 1.02183 0.85118 0.77158 0.78572 0.78257 1.20160 1.21807 1.20356 1.19431 0.91044 0.83608 1.43777 0.90027 1.44639 1.02599 1.00819 1.87296 1.20946 0.83680 0.90979 0.98396 1.22800 0.96442 0.94742 1.02004 1.23124 0.95631 0.79728 0.98110 0.90024 1.87801 1.69715 1.21682 1.49756 1.20379 0.95904 0.84687 0.92844 1.23498 0.99131 0.96793 0.96527 1.22945 1.06770 0.95785 0.99729 1.26902 0.93962 0.98764 0.92276 1.84781 1.53462 1.29885 1.28902 1.73782 1.22054 0.94965 1.18965 1.22082 0.95752 0.85467 0.98010 0.94194 0.96989 0.96133 0.89095 0.90594 0.90032 0.91013 0.80109 0.71634 0.93754 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 10.31 21.65 0.22 -56.95 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 3 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.25 -14.23 10.28 84.04 0.86 -13.36 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -32.85 3.39 -692.02 -2.35 -35.19 16 10 C 0.18 9.20 5.38 86.73 0.47 9.66 16 11 C -0.12 -4.50 6.68 31.79 0.21 -4.29 16 12 C 0.09 3.22 3.49 31.98 0.11 3.33 16 13 H 0.08 2.68 7.90 -2.39 -0.02 2.66 16 14 O -0.37 -11.39 9.65 -148.98 -1.44 -12.83 16 15 C 0.14 3.72 6.44 71.24 0.46 4.18 16 16 C 0.00 -0.05 7.28 43.58 0.32 0.26 16 17 C -0.23 -4.75 10.52 22.40 0.24 -4.51 16 18 C -0.04 -0.54 12.30 67.18 0.83 0.28 16 19 O 0.10 2.00 11.20 71.60 0.80 2.80 16 20 N -0.39 -10.32 12.07 -49.56 -0.60 -10.92 16 21 C 0.11 4.75 6.97 86.85 0.60 5.36 16 22 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 23 H 0.01 0.66 7.52 -2.39 -0.02 0.64 16 24 H 0.02 1.12 7.37 -2.39 -0.02 1.10 16 25 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 26 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.18 3.45 8.05 -2.91 -0.02 3.43 16 30 H 0.27 0.66 8.06 -2.91 -0.02 0.64 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.36 276.17 4.34 -65.02 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.11 Total: 2.45 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 4.56 Total: -2.18 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -2.72 Total: -103.06 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.64 Total: -10.03 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.36 4.34 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222729426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.250 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds