Wall clock time and date at job start Sun Mar 29 2020 22:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48504 * 109.46992 * 270.00093 * 3 2 1 5 5 H 1.48505 * 109.46737 * 30.00089 * 3 2 1 6 6 H 1.48500 * 109.47118 * 150.00412 * 3 2 1 7 7 C 1.38813 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64763 * 0.04196 * 9 7 2 11 11 C 1.54328 * 107.27061 * 181.02581 * 10 9 7 12 12 C 1.55150 * 102.94110 * 22.19436 * 11 10 9 13 13 H 1.08995 * 111.04235 * 82.59047 * 12 11 10 14 14 O 1.42902 * 111.00248 * 206.42327 * 12 11 10 15 15 C 1.42898 * 114.00186 * 203.64701 * 14 12 11 16 16 C 1.50703 * 109.47171 * 180.02562 * 15 14 12 17 17 C 1.41378 * 126.79996 * 359.70926 * 16 15 14 18 18 C 1.35455 * 103.98332 * 179.88920 * 17 16 15 19 19 O 1.34045 * 106.44740 * 0.37319 * 18 17 16 20 20 N 1.20928 * 111.56210 * 359.74592 * 19 18 17 21 21 C 1.47423 * 125.64727 * 180.02562 * 9 7 2 22 22 H 0.96997 * 119.99309 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.88221 * 300.44420 * 10 9 7 24 24 H 1.09001 * 109.88492 * 61.60585 * 10 9 7 25 25 H 1.08997 * 110.71897 * 263.82810 * 11 10 9 26 26 H 1.09005 * 110.71781 * 140.55650 * 11 10 9 27 27 H 1.09002 * 109.47259 * 300.00293 * 15 14 12 28 28 H 1.09001 * 109.47074 * 60.00315 * 15 14 12 29 29 H 1.07994 * 128.01086 * 0.02878 * 17 16 15 30 30 H 1.08002 * 126.78028 * 180.13642 * 18 17 16 31 31 H 1.09002 * 110.37105 * 37.06352 * 21 9 7 32 32 H 1.09004 * 110.36629 * 274.74271 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4485 -4.0441 0.0256 12 6 0.8517 -4.6562 0.6105 13 1 0.8569 -4.5971 1.6989 14 8 1.0245 -6.0055 0.1729 15 6 1.8453 -6.7957 1.0353 16 6 1.9592 -8.1921 0.4800 17 6 1.3590 -8.6852 -0.7013 18 6 1.7635 -9.9766 -0.7594 19 8 2.5281 -10.1839 0.3220 20 7 2.6248 -9.1846 0.9960 21 6 1.9334 -3.7312 -0.0005 22 1 -0.4849 0.8401 0.0004 23 1 -0.5578 -2.0522 0.8827 24 1 -0.5542 -2.0843 -0.9028 25 1 -0.6315 -4.4179 -0.9817 26 1 -1.2987 -4.2516 0.6755 27 1 2.8376 -6.3495 1.1019 28 1 1.3971 -6.8346 2.0282 29 1 0.7266 -8.1545 -1.3975 30 1 1.5156 -10.6981 -1.5238 31 1 2.8327 -3.7406 0.6153 32 1 2.1668 -4.0419 -1.0189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222729429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:43 Heat of formation + Delta-G solvation = 48.994178 kcal Electronic energy + Delta-G solvation = -16519.588002 eV Core-core repulsion = 13677.969675 eV Total energy + Delta-G solvation = -2841.618327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.00701 -38.51464 -36.20221 -34.09640 -32.16169 -31.78313 -29.31565 -27.71847 -26.65904 -24.31895 -23.06241 -21.35507 -20.29906 -20.07530 -17.99198 -17.68150 -16.99975 -16.42171 -15.31200 -15.01537 -14.66391 -14.19219 -13.92586 -13.42267 -13.06218 -12.43054 -12.34587 -11.90651 -11.74861 -11.49254 -11.11748 -10.95238 -10.76453 -10.26482 -10.17221 -10.09247 -9.83692 -9.76224 -9.70637 -9.15279 -8.61944 -6.86455 -5.73364 -3.07552 1.40930 2.17154 3.15123 3.39100 3.41258 3.45219 3.46888 4.42244 4.49958 4.67399 5.09774 5.23554 5.28090 5.41026 5.43861 5.47981 5.51775 5.58541 5.71070 5.80314 5.96658 6.21986 6.42473 6.48921 6.63012 6.66406 7.47328 7.53088 7.58354 7.79803 8.16122 8.23004 9.19398 9.79354 10.44540 11.38420 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062533 B = 0.004450 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.655631 B = 6290.450232 C = 6535.483278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.136 4.136 12 C 0.073 3.927 13 H 0.070 0.930 14 O -0.374 6.374 15 C 0.142 3.858 16 C 0.021 3.979 17 C -0.205 4.205 18 C -0.071 4.071 19 O 0.097 5.903 20 N -0.365 5.365 21 C 0.117 3.883 22 H 0.253 0.747 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.176 0.824 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -16.933 -0.620 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.174 4.174 12 C 0.015 3.985 13 H 0.088 0.912 14 O -0.292 6.292 15 C 0.064 3.936 16 C -0.138 4.138 17 C -0.226 4.226 18 C -0.152 4.152 19 O 0.031 5.969 20 N -0.071 5.071 21 C -0.010 4.010 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.194 0.806 30 H 0.233 0.767 31 H 0.056 0.944 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.332 -16.897 0.319 16.952 hybrid contribution -0.014 1.260 -0.566 1.381 sum 1.318 -15.637 -0.247 15.694 Atomic orbital electron populations 1.69954 1.04905 1.25121 1.57021 1.24812 0.95746 0.97698 1.02121 0.86095 0.78569 0.83340 0.77611 1.21543 1.21621 1.20669 1.19072 0.90484 0.82270 1.43968 0.90374 1.44349 1.01735 0.99686 1.87398 1.21187 0.84399 0.87597 1.01486 1.22983 0.95025 0.98764 1.00638 1.23486 0.97855 0.79253 0.97891 0.91218 1.87819 1.69303 1.22847 1.49197 1.20303 0.96241 0.84457 0.92607 1.23418 0.97992 0.96953 0.95400 1.22752 1.05346 0.94510 1.00011 1.26041 0.96910 0.98929 0.93332 1.84823 1.53344 1.30626 1.28156 1.73779 1.21156 0.94379 1.17756 1.21940 0.94510 0.86668 0.97856 0.93684 0.93266 0.93467 0.91394 0.91708 0.90931 0.91178 0.80608 0.76669 0.94392 0.95397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.66 3.39 -170.08 -0.58 -16.23 16 10 C 0.18 4.33 5.37 -3.07 -0.02 4.32 16 11 C -0.14 -2.58 6.69 -24.90 -0.17 -2.75 16 12 C 0.07 1.33 3.49 -24.60 -0.09 1.24 16 13 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 14 O -0.37 -6.06 9.65 -35.23 -0.34 -6.40 16 15 C 0.14 1.99 6.44 36.01 0.23 2.23 16 16 C 0.02 0.28 7.28 -82.10 -0.60 -0.31 16 17 C -0.20 -2.34 10.52 -39.38 -0.41 -2.76 16 18 C -0.07 -0.62 12.30 29.74 0.37 -0.26 16 19 O 0.10 1.12 11.20 17.16 0.19 1.32 16 20 N -0.37 -5.07 12.07 33.42 0.40 -4.67 16 21 C 0.12 2.49 6.97 -2.54 -0.02 2.48 16 22 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 24 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.18 1.87 8.05 -52.49 -0.42 1.44 16 30 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 276.17 15.07 4.16 4.16 Total: -1.00 -31.61 276.17 -5.67 -37.28 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.11 Total: -3.30 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.95 Total: -2.75 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.40 Total: -47.40 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.15 Total: -5.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.61 -5.67 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222729429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.278 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds