Wall clock time and date at job start Sun Mar 29 2020 22:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48504 * 109.46992 * 270.00093 * 3 2 1 5 5 H 1.48505 * 109.46737 * 30.00089 * 3 2 1 6 6 H 1.48500 * 109.47118 * 150.00412 * 3 2 1 7 7 C 1.38813 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64763 * 0.04196 * 9 7 2 11 11 C 1.54328 * 107.27061 * 181.02581 * 10 9 7 12 12 C 1.55150 * 102.94110 * 22.19436 * 11 10 9 13 13 H 1.08995 * 111.04235 * 82.59047 * 12 11 10 14 14 O 1.42902 * 111.00248 * 206.42327 * 12 11 10 15 15 C 1.42898 * 114.00186 * 203.64701 * 14 12 11 16 16 C 1.50703 * 109.47171 * 180.02562 * 15 14 12 17 17 C 1.41378 * 126.79996 * 359.70926 * 16 15 14 18 18 C 1.35455 * 103.98332 * 179.88920 * 17 16 15 19 19 O 1.34045 * 106.44740 * 0.37319 * 18 17 16 20 20 N 1.20928 * 111.56210 * 359.74592 * 19 18 17 21 21 C 1.47423 * 125.64727 * 180.02562 * 9 7 2 22 22 H 0.96997 * 119.99309 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.88221 * 300.44420 * 10 9 7 24 24 H 1.09001 * 109.88492 * 61.60585 * 10 9 7 25 25 H 1.08997 * 110.71897 * 263.82810 * 11 10 9 26 26 H 1.09005 * 110.71781 * 140.55650 * 11 10 9 27 27 H 1.09002 * 109.47259 * 300.00293 * 15 14 12 28 28 H 1.09001 * 109.47074 * 60.00315 * 15 14 12 29 29 H 1.07994 * 128.01086 * 0.02878 * 17 16 15 30 30 H 1.08002 * 126.78028 * 180.13642 * 18 17 16 31 31 H 1.09002 * 110.37105 * 37.06352 * 21 9 7 32 32 H 1.09004 * 110.36629 * 274.74271 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4485 -4.0441 0.0256 12 6 0.8517 -4.6562 0.6105 13 1 0.8569 -4.5971 1.6989 14 8 1.0245 -6.0055 0.1729 15 6 1.8453 -6.7957 1.0353 16 6 1.9592 -8.1921 0.4800 17 6 1.3590 -8.6852 -0.7013 18 6 1.7635 -9.9766 -0.7594 19 8 2.5281 -10.1839 0.3220 20 7 2.6248 -9.1846 0.9960 21 6 1.9334 -3.7312 -0.0005 22 1 -0.4849 0.8401 0.0004 23 1 -0.5578 -2.0522 0.8827 24 1 -0.5542 -2.0843 -0.9028 25 1 -0.6315 -4.4179 -0.9817 26 1 -1.2987 -4.2516 0.6755 27 1 2.8376 -6.3495 1.1019 28 1 1.3971 -6.8346 2.0282 29 1 0.7266 -8.1545 -1.3975 30 1 1.5156 -10.6981 -1.5238 31 1 2.8327 -3.7406 0.6153 32 1 2.1668 -4.0419 -1.0189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222729429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:43 Heat of formation + Delta-G solvation = 28.099111 kcal Electronic energy + Delta-G solvation = -16520.494080 eV Core-core repulsion = 13677.969675 eV Total energy + Delta-G solvation = -2842.524405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.91554 -39.99662 -37.79294 -35.19197 -34.07140 -32.65077 -31.17094 -29.22054 -28.10338 -26.24650 -23.99134 -22.34779 -22.06863 -21.66888 -19.04145 -18.84519 -18.60748 -17.81031 -16.70489 -16.54680 -16.13056 -15.71218 -15.36304 -14.83059 -14.19504 -14.03710 -13.96543 -13.65197 -13.10955 -12.89156 -12.80930 -12.54363 -12.30830 -12.06953 -12.03332 -11.81277 -11.48185 -11.19212 -10.73004 -10.61242 -10.42687 -8.94404 -7.87340 -5.24272 0.60616 1.26984 1.46304 1.48325 1.57075 2.13723 2.48216 2.52958 3.31273 3.41086 3.70117 3.78663 3.82382 4.02022 4.14228 4.19373 4.31471 4.39774 4.56557 4.62255 4.71916 4.81377 4.93207 5.01535 5.04977 5.16496 5.42232 5.61983 5.71687 6.09199 6.20834 7.07261 7.31057 7.72904 8.36862 9.23057 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062533 B = 0.004450 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.655631 B = 6290.450232 C = 6535.483278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.122 4.122 12 C 0.092 3.908 13 H 0.082 0.918 14 O -0.372 6.372 15 C 0.139 3.861 16 C -0.002 4.002 17 C -0.231 4.231 18 C -0.038 4.038 19 O 0.096 5.904 20 N -0.391 5.391 21 C 0.113 3.887 22 H 0.249 0.751 23 H 0.020 0.980 24 H 0.012 0.988 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.182 0.818 30 H 0.268 0.732 31 H 0.044 0.956 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -18.605 -0.859 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.160 4.160 12 C 0.034 3.966 13 H 0.100 0.900 14 O -0.290 6.290 15 C 0.062 3.938 16 C -0.159 4.159 17 C -0.252 4.252 18 C -0.119 4.119 19 O 0.030 5.970 20 N -0.098 5.098 21 C -0.013 4.013 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.199 0.801 30 H 0.284 0.716 31 H 0.062 0.938 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.777 -18.603 0.086 18.688 hybrid contribution -0.118 1.665 -0.550 1.757 sum 1.659 -16.939 -0.465 17.026 Atomic orbital electron populations 1.70168 1.06296 1.25485 1.57940 1.25671 0.96666 1.01035 1.02223 0.85046 0.77659 0.78888 0.77518 1.21250 1.21816 1.19345 1.19469 0.91047 0.83593 1.43606 0.90008 1.44646 1.02605 1.00831 1.87282 1.20948 0.83679 0.90997 0.98401 1.22801 0.96448 0.94727 1.01996 1.23133 0.95641 0.79736 0.98105 0.90024 1.87802 1.69692 1.21675 1.49785 1.20381 0.95903 0.84687 0.92845 1.23499 0.99043 0.96774 0.96629 1.22944 1.06576 0.95841 0.99862 1.26904 0.93828 0.98825 0.92349 1.84784 1.53554 1.29874 1.28825 1.73783 1.22149 0.94898 1.18943 1.22087 0.95753 0.85453 0.98020 0.94206 0.96171 0.96961 0.90565 0.89088 0.91013 0.90034 0.80103 0.71635 0.93750 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.20 10.31 21.65 0.22 -56.97 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 3 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.25 -14.14 10.28 84.03 0.86 -13.27 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.83 3.39 -692.02 -2.35 -35.18 16 10 C 0.18 9.18 5.37 86.73 0.47 9.65 16 11 C -0.12 -4.49 6.69 31.78 0.21 -4.28 16 12 C 0.09 3.21 3.49 31.98 0.11 3.32 16 13 H 0.08 2.68 7.90 -2.39 -0.02 2.66 16 14 O -0.37 -11.38 9.65 -148.98 -1.44 -12.82 16 15 C 0.14 3.72 6.44 71.24 0.46 4.18 16 16 C 0.00 -0.05 7.28 43.58 0.32 0.27 16 17 C -0.23 -4.74 10.52 22.40 0.24 -4.50 16 18 C -0.04 -0.54 12.30 67.18 0.83 0.28 16 19 O 0.10 2.00 11.20 71.58 0.80 2.80 16 20 N -0.39 -10.32 12.07 -49.55 -0.60 -10.92 16 21 C 0.11 4.75 6.97 86.85 0.61 5.35 16 22 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 23 H 0.02 1.10 7.38 -2.39 -0.02 1.08 16 24 H 0.01 0.68 7.51 -2.39 -0.02 0.66 16 25 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 26 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 29 H 0.18 3.45 8.05 -2.91 -0.02 3.42 16 30 H 0.27 0.66 8.06 -2.91 -0.02 0.63 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -69.40 276.17 4.34 -65.06 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.11 Total: 2.33 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.56 Total: -2.13 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -2.72 Total: -103.07 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.64 Total: -10.02 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.40 4.34 -65.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222729429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.162 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds