Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48497 * 109.46975 * 239.99717 * 3 2 1 5 5 H 1.48505 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38806 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64797 * 0.04249 * 9 7 2 11 11 C 1.55122 * 104.94407 * 203.96672 * 10 9 7 12 12 C 1.55161 * 101.48343 * 323.22005 * 11 10 9 13 13 H 1.09002 * 110.72084 * 276.83186 * 12 11 10 14 14 O 1.42899 * 110.71841 * 153.73278 * 12 11 10 15 15 C 1.42905 * 113.99778 * 152.43958 * 14 12 11 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 12 17 17 N 1.30255 * 125.61943 * 90.00272 * 16 15 14 18 18 C 1.34480 * 108.69901 * 179.97438 * 17 16 15 19 19 C 1.34327 * 107.66956 * 0.02562 * 18 17 16 20 20 O 1.33975 * 125.61948 * 269.69427 * 16 15 14 21 21 C 1.47028 * 125.65061 * 179.97438 * 9 7 2 22 22 H 0.96998 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.36627 * 322.92903 * 10 9 7 24 24 H 1.09001 * 110.36460 * 85.14114 * 10 9 7 25 25 H 1.08998 * 111.16313 * 205.13417 * 11 10 9 26 26 H 1.08997 * 110.93623 * 81.21111 * 11 10 9 27 27 H 1.09000 * 109.47187 * 300.00233 * 15 14 12 28 28 H 1.09001 * 109.46558 * 60.00281 * 15 14 12 29 29 H 1.08003 * 126.15964 * 179.97438 * 18 17 16 30 30 H 1.08008 * 126.43907 * 180.02562 * 19 18 17 31 31 H 1.09006 * 109.87853 * 59.55836 * 21 9 7 32 32 H 1.09000 * 109.87941 * 298.39792 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0009 11 6 -0.4053 -3.9351 0.6085 12 6 0.7785 -4.7524 0.0271 13 1 0.5491 -5.1005 -0.9801 14 8 1.0997 -5.8534 0.8796 15 6 1.6867 -6.9640 0.1983 16 6 1.9822 -8.0613 1.1882 17 7 1.1678 -9.0216 1.5217 18 6 1.7764 -9.8079 2.4273 19 6 3.0014 -9.3030 2.6479 20 8 3.1280 -8.2131 1.8658 21 6 1.9319 -3.7275 0.0005 22 1 -0.4850 0.8400 0.0004 23 1 -0.5998 -1.7588 0.6141 24 1 -0.5264 -2.4850 -1.0195 25 1 -1.3606 -4.3373 0.2713 26 1 -0.3596 -3.9015 1.6970 27 1 0.9939 -7.3340 -0.5576 28 1 2.6129 -6.6477 -0.2813 29 1 1.3555 -10.6864 2.8937 30 1 3.7469 -9.6993 3.3216 31 1 2.5579 -3.8510 0.8843 32 1 2.5288 -3.8642 -0.9012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223120815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = 14.858726 kcal Electronic energy + Delta-G solvation = -16522.657319 eV Core-core repulsion = 13679.558767 eV Total energy + Delta-G solvation = -2843.098551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.40295 -38.49181 -36.02109 -34.81972 -32.35347 -31.03151 -29.18967 -27.38021 -26.48283 -24.28828 -22.69134 -21.49870 -20.28886 -20.15412 -17.72783 -17.15965 -16.85906 -16.16343 -15.54175 -15.11241 -14.70667 -14.28803 -13.92115 -13.39410 -13.25221 -12.47482 -12.27295 -11.76646 -11.53293 -11.44227 -11.18313 -10.96699 -10.76510 -10.70679 -10.33738 -10.14240 -9.79680 -9.57707 -9.27342 -9.09078 -8.65193 -6.84735 -5.65463 -3.07650 1.26595 2.44587 2.63932 3.41553 3.45397 3.46946 3.72968 4.31579 4.51238 4.76417 4.87229 5.12472 5.22115 5.36938 5.45126 5.50445 5.60119 5.70711 5.74357 5.82713 6.12233 6.31137 6.49051 6.57117 6.59997 6.68765 7.43911 7.50196 7.60797 7.61842 7.84426 8.35273 9.21278 9.81932 10.45934 11.38634 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.053999 B = 0.004624 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.402808 B = 6054.560495 C = 6375.981678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.137 4.137 12 C 0.077 3.923 13 H 0.070 0.930 14 O -0.371 6.371 15 C 0.157 3.843 16 C 0.201 3.799 17 N -0.469 5.469 18 C -0.048 4.048 19 C -0.073 4.073 20 O -0.195 6.195 21 C 0.116 3.884 22 H 0.253 0.747 23 H 0.111 0.889 24 H 0.015 0.985 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.185 0.815 30 H 0.216 0.784 31 H 0.034 0.966 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -16.756 2.120 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.176 4.176 12 C 0.019 3.981 13 H 0.088 0.912 14 O -0.289 6.289 15 C 0.079 3.921 16 C -0.006 4.006 17 N -0.201 5.201 18 C -0.186 4.186 19 C -0.144 4.144 20 O -0.081 6.081 21 C -0.011 4.011 22 H 0.064 0.936 23 H 0.129 0.871 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.202 0.798 30 H 0.233 0.767 31 H 0.052 0.948 32 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.882 -16.527 2.043 16.901 hybrid contribution 1.281 0.623 0.173 1.435 sum 4.163 -15.904 2.216 16.589 Atomic orbital electron populations 1.69762 1.04911 1.24982 1.57531 1.24793 0.95746 0.97736 1.02321 0.86123 0.78387 0.82904 0.77903 1.21194 1.21519 1.21129 1.19045 0.90528 0.82335 1.43281 0.90462 1.44369 1.01950 0.99528 1.87048 1.22014 0.84761 0.92063 0.98421 1.23211 0.95138 0.97785 1.01475 1.23368 0.96823 0.85009 0.92876 0.91233 1.88011 1.81110 1.24567 1.35247 1.20521 0.99593 0.83175 0.88773 1.25964 0.80117 0.97593 0.96957 1.70463 1.31077 1.04767 1.13744 1.23403 0.93052 1.02488 0.99705 1.25096 1.01249 0.89013 0.99003 1.84488 1.38829 1.40525 1.44244 1.21719 0.94249 0.86633 0.98471 0.93599 0.87091 0.96685 0.91674 0.91075 0.88919 0.90202 0.79822 0.76748 0.94760 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.77 3.40 -169.94 -0.58 -16.35 16 10 C 0.15 3.74 5.89 -2.41 -0.01 3.72 16 11 C -0.14 -2.74 6.83 -24.47 -0.17 -2.90 16 12 C 0.08 1.40 3.41 -24.90 -0.08 1.32 16 13 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 14 O -0.37 -6.49 10.05 -35.23 -0.35 -6.84 16 15 C 0.16 2.15 6.41 36.01 0.23 2.38 16 16 C 0.20 2.91 7.97 -12.95 -0.10 2.80 16 17 N -0.47 -6.87 11.29 -11.10 -0.13 -6.99 16 18 C -0.05 -0.53 11.89 -17.77 -0.21 -0.74 16 19 C -0.07 -0.73 12.17 29.35 0.36 -0.37 16 20 O -0.20 -2.65 10.78 5.36 0.06 -2.59 16 21 C 0.12 2.50 7.02 -3.06 -0.02 2.48 16 22 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.11 3.05 5.87 -51.93 -0.30 2.75 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.22 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -32.94 276.70 -5.61 -38.55 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.06 Total: -2.44 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.26 Total: 1.81 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.14 Total: -49.77 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.30 Total: -9.44 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.94 -5.61 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223120815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.411 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds