Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48497 * 109.46975 * 239.99717 * 3 2 1 5 5 H 1.48505 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38806 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64797 * 0.04249 * 9 7 2 11 11 C 1.55122 * 104.94407 * 203.96672 * 10 9 7 12 12 C 1.55161 * 101.48343 * 323.22005 * 11 10 9 13 13 H 1.09002 * 110.72084 * 276.83186 * 12 11 10 14 14 O 1.42899 * 110.71841 * 153.73278 * 12 11 10 15 15 C 1.42905 * 113.99778 * 152.43958 * 14 12 11 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 12 17 17 N 1.30255 * 125.61943 * 90.00272 * 16 15 14 18 18 C 1.34480 * 108.69901 * 179.97438 * 17 16 15 19 19 C 1.34327 * 107.66956 * 0.02562 * 18 17 16 20 20 O 1.33975 * 125.61948 * 269.69427 * 16 15 14 21 21 C 1.47028 * 125.65061 * 179.97438 * 9 7 2 22 22 H 0.96998 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.36627 * 322.92903 * 10 9 7 24 24 H 1.09001 * 110.36460 * 85.14114 * 10 9 7 25 25 H 1.08998 * 111.16313 * 205.13417 * 11 10 9 26 26 H 1.08997 * 110.93623 * 81.21111 * 11 10 9 27 27 H 1.09000 * 109.47187 * 300.00233 * 15 14 12 28 28 H 1.09001 * 109.46558 * 60.00281 * 15 14 12 29 29 H 1.08003 * 126.15964 * 179.97438 * 18 17 16 30 30 H 1.08008 * 126.43907 * 180.02562 * 19 18 17 31 31 H 1.09006 * 109.87853 * 59.55836 * 21 9 7 32 32 H 1.09000 * 109.87941 * 298.39792 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0009 11 6 -0.4053 -3.9351 0.6085 12 6 0.7785 -4.7524 0.0271 13 1 0.5491 -5.1005 -0.9801 14 8 1.0997 -5.8534 0.8796 15 6 1.6867 -6.9640 0.1983 16 6 1.9822 -8.0613 1.1882 17 7 1.1678 -9.0216 1.5217 18 6 1.7764 -9.8079 2.4273 19 6 3.0014 -9.3030 2.6479 20 8 3.1280 -8.2131 1.8658 21 6 1.9319 -3.7275 0.0005 22 1 -0.4850 0.8400 0.0004 23 1 -0.5998 -1.7588 0.6141 24 1 -0.5264 -2.4850 -1.0195 25 1 -1.3606 -4.3373 0.2713 26 1 -0.3596 -3.9015 1.6970 27 1 0.9939 -7.3340 -0.5576 28 1 2.6129 -6.6477 -0.2813 29 1 1.3555 -10.6864 2.8937 30 1 3.7469 -9.6993 3.3216 31 1 2.5579 -3.8510 0.8843 32 1 2.5288 -3.8642 -0.9012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223120815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = -9.979289 kcal Electronic energy + Delta-G solvation = -16523.734376 eV Core-core repulsion = 13679.558767 eV Total energy + Delta-G solvation = -2844.175609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.31915 -39.97457 -37.65842 -35.78432 -34.26678 -32.15790 -30.99354 -28.95629 -27.72106 -26.21487 -23.56691 -22.53589 -22.03481 -21.82879 -19.02342 -18.64572 -18.18210 -17.35095 -16.72496 -16.51503 -16.36117 -15.64979 -15.44736 -14.93865 -14.28204 -14.11412 -13.73202 -13.58004 -13.13113 -12.97173 -12.65261 -12.54720 -12.38541 -12.09540 -12.05143 -11.77644 -11.67435 -11.35438 -10.74945 -10.65205 -9.96224 -8.90982 -7.77960 -5.23260 0.34735 1.47697 1.51199 1.53645 1.57887 1.76828 2.48924 2.70711 3.23178 3.33696 3.70278 3.78801 3.98827 4.05933 4.11514 4.18888 4.28230 4.35579 4.63875 4.75207 4.78515 4.92665 4.96870 4.99146 5.04544 5.28204 5.45041 5.60479 5.77744 6.12735 6.30246 6.69070 7.09478 7.75954 8.39209 9.24001 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.053999 B = 0.004624 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.402808 B = 6054.560495 C = 6375.981678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.126 4.126 12 C 0.095 3.905 13 H 0.100 0.900 14 O -0.388 6.388 15 C 0.153 3.847 16 C 0.172 3.828 17 N -0.494 5.494 18 C -0.067 4.067 19 C -0.057 4.057 20 O -0.212 6.212 21 C 0.111 3.889 22 H 0.249 0.751 23 H 0.076 0.924 24 H 0.001 0.999 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.215 0.785 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -18.312 2.270 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.165 4.165 12 C 0.037 3.963 13 H 0.118 0.882 14 O -0.307 6.307 15 C 0.076 3.924 16 C -0.034 4.034 17 N -0.226 5.226 18 C -0.205 4.205 19 C -0.127 4.127 20 O -0.098 6.098 21 C -0.014 4.014 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.019 0.981 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.278 0.722 31 H 0.041 0.959 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.852 -18.118 2.194 18.652 hybrid contribution 1.035 0.973 0.199 1.434 sum 4.886 -17.145 2.394 17.988 Atomic orbital electron populations 1.70018 1.06213 1.25288 1.58289 1.25655 0.96686 1.01010 1.02381 0.85087 0.77121 0.78513 0.78190 1.20220 1.21735 1.20446 1.19433 0.91065 0.83688 1.43154 0.90171 1.44677 1.02829 1.00707 1.87084 1.21786 0.84090 0.93983 0.97194 1.23022 0.97516 0.95468 1.00488 1.23090 0.94261 0.84694 0.94226 0.88222 1.87965 1.81511 1.25152 1.36028 1.20766 1.00662 0.82004 0.88941 1.26029 0.80753 0.98330 0.98333 1.70426 1.31958 1.05450 1.14756 1.24002 0.93621 1.03362 0.99542 1.26061 1.01843 0.87177 0.97636 1.84487 1.38755 1.41819 1.44741 1.21892 0.95500 0.85655 0.98392 0.94150 0.90560 0.98083 0.88684 0.92272 0.86883 0.88624 0.76833 0.72242 0.95856 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 10.09 21.65 0.22 -56.58 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -14.00 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -33.14 3.40 -691.55 -2.35 -35.49 16 10 C 0.15 7.72 5.89 86.93 0.51 8.23 16 11 C -0.13 -4.94 6.83 32.06 0.22 -4.72 16 12 C 0.09 3.32 3.41 31.78 0.11 3.43 16 13 H 0.10 2.91 7.85 -2.39 -0.02 2.89 16 14 O -0.39 -12.97 10.05 -148.98 -1.50 -14.47 16 15 C 0.15 3.91 6.41 71.24 0.46 4.36 16 16 C 0.17 4.74 7.97 88.34 0.70 5.44 16 17 N -0.49 -13.68 11.29 -303.82 -3.43 -17.12 16 18 C -0.07 -1.33 11.89 83.39 0.99 -0.34 16 19 C -0.06 -0.99 12.17 66.93 0.81 -0.17 16 20 O -0.21 -5.39 10.78 -3.75 -0.04 -5.43 16 21 C 0.11 4.73 7.02 86.73 0.61 5.34 16 22 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 23 H 0.08 4.35 5.87 -2.39 -0.01 4.34 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.26 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.02 1.04 8.06 -2.38 -0.02 1.02 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.39 276.70 1.78 -70.60 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.11 Total: 5.40 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.74 Total: 5.20 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.56 Total: -109.18 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.54 Total: -19.90 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.39 1.78 -70.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223120815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.623 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds