Wall clock time and date at job start Sun Mar 29 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64724 * 359.68939 * 9 7 2 11 11 C 1.54337 * 107.26147 * 178.85267 * 10 9 7 12 12 C 1.55150 * 103.02027 * 338.13566 * 11 10 9 13 13 H 1.08997 * 111.00858 * 277.23433 * 12 11 10 14 14 O 1.42902 * 111.03459 * 153.39867 * 12 11 10 15 15 C 1.42900 * 114.00159 * 156.33093 * 14 12 11 16 16 C 1.50698 * 109.47603 * 179.97438 * 15 14 12 17 17 C 1.34330 * 126.16243 * 0.02562 * 16 15 14 18 18 O 1.34755 * 107.11540 * 179.97438 * 17 16 15 19 19 C 1.33971 * 107.75057 * 0.02562 * 18 17 16 20 20 N 1.30255 * 108.76211 * 359.72629 * 19 18 17 21 21 C 1.47426 * 125.64579 * 179.97438 * 9 7 2 22 22 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88145 * 298.39368 * 10 9 7 24 24 H 1.08997 * 109.88249 * 59.56209 * 10 9 7 25 25 H 1.09007 * 110.84502 * 219.66866 * 11 10 9 26 26 H 1.09003 * 110.67176 * 96.52401 * 11 10 9 27 27 H 1.08994 * 109.47355 * 300.00440 * 15 14 12 28 28 H 1.09009 * 109.46932 * 59.99909 * 15 14 12 29 29 H 1.08001 * 126.44732 * 359.97438 * 17 16 15 30 30 H 1.08001 * 125.61604 * 180.02562 * 19 18 17 31 31 H 1.09000 * 110.36316 * 322.92674 * 21 9 7 32 32 H 1.08994 * 110.36888 * 85.14224 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0065 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8517 -4.6562 -0.6104 13 1 0.8564 -4.5966 -1.6988 14 8 1.0252 -6.0056 -0.1734 15 6 1.8457 -6.7952 -1.0367 16 6 1.9603 -8.1918 -0.4821 17 6 1.3888 -8.6462 0.6454 18 8 1.7413 -9.9404 0.7750 19 6 2.5194 -10.2581 -0.2683 20 7 2.6485 -9.2091 -1.0295 21 6 1.9334 -3.7312 0.0005 22 1 -0.4849 0.8400 -0.0004 23 1 -0.5505 -2.0864 0.9111 24 1 -0.5613 -2.0502 -0.8742 25 1 -1.2987 -4.2516 -0.6752 26 1 -0.6331 -4.4203 0.9808 27 1 1.3972 -6.8338 -2.0293 28 1 2.8379 -6.3487 -1.1035 29 1 0.7642 -8.0808 1.3211 30 1 2.9624 -11.2261 -0.4508 31 1 2.8326 -3.7405 -0.6155 32 1 2.1687 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223141359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:46 Heat of formation + Delta-G solvation = 10.573013 kcal Electronic energy + Delta-G solvation = -16502.259901 eV Core-core repulsion = 13658.975507 eV Total energy + Delta-G solvation = -2843.284394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40252 -38.46508 -36.16533 -34.82544 -32.28204 -30.72106 -29.17127 -27.27982 -26.36520 -24.28734 -22.81536 -21.34365 -20.30965 -20.07859 -17.76690 -16.98215 -16.71302 -16.42951 -15.10973 -15.04774 -14.64346 -14.52546 -13.91088 -13.86414 -13.06385 -12.41369 -12.33116 -11.86260 -11.73917 -11.32600 -10.95806 -10.89622 -10.75937 -10.64250 -10.25082 -10.13102 -9.82825 -9.72946 -9.29222 -8.84572 -8.60432 -6.85154 -5.71960 -3.06126 1.41941 2.54931 2.80165 3.40724 3.42598 3.45692 3.47656 4.34513 4.51915 4.82030 5.12685 5.34092 5.39541 5.46346 5.53163 5.59040 5.66470 5.73369 5.81884 5.86288 6.11425 6.23338 6.44785 6.50549 6.65125 6.68423 7.45361 7.54070 7.59632 7.63115 7.81044 8.24470 9.20727 9.80740 10.46042 11.39735 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062663 B = 0.004450 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.726547 B = 6290.165999 C = 6532.144281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.136 4.136 12 C 0.076 3.924 13 H 0.070 0.930 14 O -0.382 6.382 15 C 0.146 3.854 16 C -0.019 4.019 17 C -0.044 4.044 18 O -0.209 6.209 19 C 0.164 3.836 20 N -0.483 5.483 21 C 0.117 3.883 22 H 0.253 0.747 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.222 0.778 30 H 0.249 0.751 31 H 0.038 0.962 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -17.282 -0.491 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.175 4.175 12 C 0.018 3.982 13 H 0.088 0.912 14 O -0.300 6.300 15 C 0.068 3.932 16 C -0.138 4.138 17 C -0.114 4.114 18 O -0.095 6.095 19 C -0.063 4.063 20 N -0.213 5.213 21 C -0.010 4.010 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.750 -17.120 -0.844 17.230 hybrid contribution 0.254 0.900 0.357 1.001 sum 2.004 -16.220 -0.488 16.351 Atomic orbital electron populations 1.69940 1.04900 1.25230 1.56956 1.24810 0.95742 0.97688 1.02125 0.86172 0.78442 0.83058 0.77926 1.21134 1.21553 1.21138 1.19027 0.90460 0.82291 1.44065 0.90425 1.44343 1.01731 0.99697 1.87402 1.21183 0.84406 0.87598 1.01462 1.22988 0.95089 0.98797 1.00602 1.23448 0.97712 0.79171 0.97905 0.91187 1.87737 1.69599 1.23026 1.49633 1.20265 0.95843 0.84565 0.92488 1.21424 1.00478 0.96393 0.95516 1.24925 1.03866 0.81270 1.01375 1.84505 1.52941 1.27720 1.44305 1.28037 0.94774 1.00468 0.82995 1.70200 1.21574 0.99297 1.30233 1.21935 0.94556 0.86648 0.97835 0.93641 0.93533 0.93235 0.91725 0.91473 0.91496 0.91240 0.76114 0.73506 0.94355 0.95455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.67 3.39 -170.08 -0.58 -16.25 16 10 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 11 C -0.14 -2.59 6.68 -24.89 -0.17 -2.76 16 12 C 0.08 1.37 3.49 -24.60 -0.09 1.28 16 13 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 14 O -0.38 -6.11 9.45 -35.23 -0.33 -6.44 16 15 C 0.15 2.06 6.44 36.00 0.23 2.29 16 16 C -0.02 -0.26 7.09 -82.82 -0.59 -0.85 16 17 C -0.04 -0.54 11.50 29.35 0.34 -0.20 16 18 O -0.21 -2.30 10.78 5.34 0.06 -2.25 16 19 C 0.16 1.58 13.23 52.09 0.69 2.27 16 20 N -0.48 -6.32 11.29 -11.18 -0.13 -6.45 16 21 C 0.12 2.49 6.97 -2.54 -0.02 2.48 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 24 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.22 2.33 7.86 -52.49 -0.41 1.92 16 30 H 0.25 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 276.30 15.07 4.16 4.16 Total: -1.00 -32.23 276.30 -5.23 -37.46 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.10 Total: -2.70 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 0.14 Total: 1.89 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.13 Total: -49.23 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.28 Total: -8.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.23 -5.23 -37.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223141359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.035 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds