Wall clock time and date at job start Sun Mar 29 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64724 * 359.68939 * 9 7 2 11 11 C 1.54337 * 107.26147 * 178.85267 * 10 9 7 12 12 C 1.55150 * 103.02027 * 338.13566 * 11 10 9 13 13 H 1.08997 * 111.00858 * 277.23433 * 12 11 10 14 14 O 1.42902 * 111.03459 * 153.39867 * 12 11 10 15 15 C 1.42900 * 114.00159 * 156.33093 * 14 12 11 16 16 C 1.50698 * 109.47603 * 179.97438 * 15 14 12 17 17 C 1.34330 * 126.16243 * 0.02562 * 16 15 14 18 18 O 1.34755 * 107.11540 * 179.97438 * 17 16 15 19 19 C 1.33971 * 107.75057 * 0.02562 * 18 17 16 20 20 N 1.30255 * 108.76211 * 359.72629 * 19 18 17 21 21 C 1.47426 * 125.64579 * 179.97438 * 9 7 2 22 22 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88145 * 298.39368 * 10 9 7 24 24 H 1.08997 * 109.88249 * 59.56209 * 10 9 7 25 25 H 1.09007 * 110.84502 * 219.66866 * 11 10 9 26 26 H 1.09003 * 110.67176 * 96.52401 * 11 10 9 27 27 H 1.08994 * 109.47355 * 300.00440 * 15 14 12 28 28 H 1.09009 * 109.46932 * 59.99909 * 15 14 12 29 29 H 1.08001 * 126.44732 * 359.97438 * 17 16 15 30 30 H 1.08001 * 125.61604 * 180.02562 * 19 18 17 31 31 H 1.09000 * 110.36316 * 322.92674 * 21 9 7 32 32 H 1.08994 * 110.36888 * 85.14224 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0065 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8517 -4.6562 -0.6104 13 1 0.8564 -4.5966 -1.6988 14 8 1.0252 -6.0056 -0.1734 15 6 1.8457 -6.7952 -1.0367 16 6 1.9603 -8.1918 -0.4821 17 6 1.3888 -8.6462 0.6454 18 8 1.7413 -9.9404 0.7750 19 6 2.5194 -10.2581 -0.2683 20 7 2.6485 -9.2091 -1.0295 21 6 1.9334 -3.7312 0.0005 22 1 -0.4849 0.8400 -0.0004 23 1 -0.5505 -2.0864 0.9111 24 1 -0.5613 -2.0502 -0.8742 25 1 -1.2987 -4.2516 -0.6752 26 1 -0.6331 -4.4203 0.9808 27 1 1.3972 -6.8338 -2.0293 28 1 2.8379 -6.3487 -1.1035 29 1 0.7642 -8.0808 1.3211 30 1 2.9624 -11.2261 -0.4508 31 1 2.8326 -3.7405 -0.6155 32 1 2.1687 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223141359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:46 Heat of formation + Delta-G solvation = -13.526382 kcal Electronic energy + Delta-G solvation = -16503.304929 eV Core-core repulsion = 13658.975507 eV Total energy + Delta-G solvation = -2844.329422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.25794 -39.95100 -37.74038 -35.81553 -34.21536 -31.85877 -30.93520 -28.91174 -27.59660 -26.20710 -23.65890 -22.35867 -21.98984 -21.78984 -19.01940 -18.58822 -17.85021 -17.57395 -16.69909 -16.39060 -16.01220 -15.78917 -15.28496 -15.25282 -14.55114 -14.11065 -13.94504 -13.64136 -13.08347 -12.85846 -12.78783 -12.48197 -12.07536 -12.05169 -12.04459 -11.77114 -11.59992 -11.43909 -10.71906 -10.64552 -9.79905 -8.93205 -7.86138 -5.23040 0.58243 1.46781 1.50230 1.56569 1.66031 2.00464 2.27109 2.51765 3.32378 3.46903 3.75729 3.80096 3.94209 4.03766 4.16040 4.21844 4.42146 4.45214 4.64424 4.74293 4.82221 4.95597 4.95894 5.03729 5.06697 5.32944 5.43142 5.63223 5.72979 6.11059 6.22447 6.73751 7.08307 7.74211 8.38203 9.23995 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062663 B = 0.004450 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.726547 B = 6290.165999 C = 6532.144281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.122 4.122 12 C 0.095 3.905 13 H 0.081 0.919 14 O -0.378 6.378 15 C 0.146 3.854 16 C -0.043 4.043 17 C -0.048 4.048 18 O -0.211 6.211 19 C 0.187 3.813 20 N -0.520 5.520 21 C 0.113 3.887 22 H 0.249 0.751 23 H 0.011 0.989 24 H 0.020 0.980 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.232 0.768 30 H 0.299 0.701 31 H 0.044 0.956 32 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -19.011 -0.675 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.160 4.160 12 C 0.036 3.964 13 H 0.099 0.901 14 O -0.296 6.296 15 C 0.069 3.931 16 C -0.161 4.161 17 C -0.118 4.118 18 O -0.097 6.097 19 C -0.039 4.039 20 N -0.251 5.251 21 C -0.013 4.013 22 H 0.058 0.942 23 H 0.030 0.970 24 H 0.038 0.962 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.248 0.752 30 H 0.314 0.686 31 H 0.062 0.938 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.489 -18.878 -1.033 19.070 hybrid contribution 0.090 1.309 0.430 1.381 sum 2.579 -17.569 -0.602 17.768 Atomic orbital electron populations 1.70160 1.06287 1.25544 1.57882 1.25674 0.96668 1.01042 1.02230 0.85117 0.77152 0.78577 0.78258 1.20142 1.21837 1.20371 1.19435 0.91052 0.83623 1.43707 0.90018 1.44644 1.02609 1.00847 1.87287 1.20947 0.83681 0.91043 0.98362 1.22806 0.96488 0.94715 1.02028 1.23091 0.95508 0.79707 0.98060 0.90098 1.87726 1.69930 1.21780 1.50122 1.20313 0.95352 0.84842 0.92638 1.21405 1.01845 0.96377 0.96481 1.25097 1.03852 0.81789 1.01108 1.84532 1.53210 1.27157 1.44799 1.29180 0.92439 1.01164 0.81167 1.70186 1.22994 1.00165 1.31741 1.22086 0.95779 0.85432 0.98020 0.94217 0.97026 0.96175 0.89113 0.90530 0.90624 0.91563 0.75162 0.68646 0.93776 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.27 10.31 21.65 0.22 -57.05 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 3 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -14.22 10.28 84.04 0.86 -13.35 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -32.89 3.39 -692.02 -2.35 -35.23 16 10 C 0.18 9.18 5.38 86.73 0.47 9.65 16 11 C -0.12 -4.50 6.68 31.79 0.21 -4.29 16 12 C 0.09 3.29 3.49 31.98 0.11 3.40 16 13 H 0.08 2.66 7.90 -2.39 -0.02 2.65 16 14 O -0.38 -11.38 9.45 -148.98 -1.41 -12.79 16 15 C 0.15 3.89 6.44 71.24 0.46 4.35 16 16 C -0.04 -1.12 7.09 41.26 0.29 -0.83 16 17 C -0.05 -1.08 11.50 66.93 0.77 -0.31 16 18 O -0.21 -4.11 10.78 -3.79 -0.04 -4.15 16 19 C 0.19 3.01 13.23 130.48 1.73 4.74 16 20 N -0.52 -12.58 11.29 -304.07 -3.43 -16.01 16 21 C 0.11 4.74 6.97 86.85 0.60 5.35 16 22 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 23 H 0.01 0.64 7.52 -2.39 -0.02 0.62 16 24 H 0.02 1.10 7.37 -2.39 -0.02 1.08 16 25 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.23 4.47 7.86 -2.91 -0.02 4.45 16 30 H 0.30 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.33 276.30 2.10 -68.23 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.11 Total: 3.55 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.97 Total: 5.57 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -5.56 Total: -108.29 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.45 Total: -16.94 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.33 2.10 -68.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223141359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.700 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds