Wall clock time and date at job start Sun Mar 29 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46995 * 264.98893 * 3 2 1 5 5 H 1.48497 * 109.47222 * 144.98567 * 3 2 1 6 6 H 1.48502 * 109.46692 * 24.98929 * 3 2 1 7 7 C 1.38811 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 189.06454 * 7 2 1 9 9 N 1.36941 * 120.00604 * 9.07328 * 7 2 1 10 10 C 1.47428 * 125.64344 * 10.43256 * 9 7 2 11 11 C 1.55124 * 104.71992 * 155.82203 * 10 9 7 12 12 C 1.55150 * 101.48860 * 37.29733 * 11 10 9 13 13 H 1.09001 * 110.87462 * 82.76149 * 12 11 10 14 14 O 1.42898 * 110.72643 * 205.96901 * 12 11 10 15 15 C 1.42898 * 114.00445 * 204.97717 * 14 12 11 16 16 C 1.50696 * 109.47213 * 179.97438 * 15 14 12 17 17 C 1.34337 * 126.44479 * 89.70880 * 16 15 14 18 18 N 1.34481 * 107.66754 * 179.87660 * 17 16 15 19 19 C 1.30251 * 108.70165 * 0.39518 * 18 17 16 20 20 O 1.33976 * 108.76150 * 359.75731 * 19 18 17 21 21 C 1.47018 * 125.65333 * 190.74952 * 9 7 2 22 22 H 0.96997 * 119.99379 * 0.02562 * 1 2 3 23 23 H 1.08991 * 110.36854 * 274.75573 * 10 9 7 24 24 H 1.08999 * 110.36513 * 37.07596 * 10 9 7 25 25 H 1.09006 * 111.19065 * 279.19363 * 11 10 9 26 26 H 1.09000 * 110.90904 * 155.27861 * 11 10 9 27 27 H 1.08997 * 109.46847 * 299.99698 * 15 14 12 28 28 H 1.08992 * 109.46926 * 59.99780 * 15 14 12 29 29 H 1.07998 * 126.16018 * 0.02562 * 17 16 15 30 30 H 1.08003 * 125.62031 * 179.73699 * 19 18 17 31 31 H 1.09003 * 109.87991 * 300.44004 * 21 9 7 32 32 H 1.09003 * 109.88107 * 61.44368 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1479 9 7 1.3383 -2.3808 -0.1859 10 6 -0.0676 -2.5105 -0.6104 11 6 -0.1555 -3.9170 -1.2586 12 6 0.7879 -4.7394 -0.3417 13 1 0.2664 -5.0678 0.5574 14 8 1.3297 -5.8581 -1.0467 15 6 1.7228 -6.9421 -0.2028 16 6 2.2761 -8.0610 -1.0471 17 6 3.5580 -8.2253 -1.4137 18 7 3.6298 -9.3436 -2.1571 19 6 2.4361 -9.8548 -2.2590 20 8 1.5771 -9.0815 -1.5814 21 6 1.8975 -3.7263 0.0102 22 1 -0.4849 0.8401 -0.0004 23 1 -0.7316 -2.4452 0.2515 24 1 -0.3159 -1.7404 -1.3407 25 1 0.2125 -3.9017 -2.2846 26 1 -1.1745 -4.3018 -1.2165 27 1 2.4875 -6.6006 0.4948 28 1 0.8574 -7.3014 0.3540 29 1 4.3827 -7.5774 -1.1556 30 1 2.1809 -10.7536 -2.8006 31 1 2.7542 -3.8712 -0.6480 32 1 2.2027 -3.8530 1.0489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223172689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:15 Heat of formation + Delta-G solvation = -13.489212 kcal Electronic energy + Delta-G solvation = -16516.741463 eV Core-core repulsion = 13672.413653 eV Total energy + Delta-G solvation = -2844.327810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.29661 -39.95926 -37.63293 -35.72904 -34.29798 -32.36926 -30.97179 -28.93596 -27.27592 -26.13369 -23.68008 -22.58050 -22.07381 -21.81581 -18.97858 -18.67121 -18.13174 -17.32768 -16.76598 -16.53969 -16.15262 -15.78723 -15.27204 -14.95418 -14.48270 -14.25028 -13.64769 -13.54058 -13.18284 -12.88571 -12.68652 -12.49527 -12.39747 -12.15994 -12.01054 -11.80947 -11.58356 -11.45262 -10.71349 -10.60162 -9.96771 -8.88330 -7.89640 -5.25258 0.36403 1.46790 1.49386 1.57205 1.63495 1.78439 2.48130 2.81644 3.30826 3.42269 3.69066 3.73052 3.90377 3.98872 4.08612 4.18548 4.24916 4.35181 4.63560 4.76320 4.81957 4.94654 4.98352 4.99789 5.03297 5.37572 5.43344 5.56663 5.68409 6.15394 6.21469 6.67837 7.06425 7.73475 8.39350 9.22332 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055081 B = 0.004591 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.221737 B = 6096.798924 C = 6425.178985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.178 3.822 11 C -0.126 4.126 12 C 0.095 3.905 13 H 0.094 0.906 14 O -0.387 6.387 15 C 0.141 3.859 16 C -0.059 4.059 17 C -0.029 4.029 18 N -0.528 5.528 19 C 0.190 3.810 20 O -0.210 6.210 21 C 0.111 3.889 22 H 0.250 0.750 23 H 0.010 0.990 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.195 0.805 30 H 0.298 0.702 31 H 0.029 0.971 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -18.105 -1.171 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.053 3.947 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.112 0.888 14 O -0.306 6.306 15 C 0.065 3.935 16 C -0.112 4.112 17 C -0.166 4.166 18 N -0.256 5.256 19 C -0.035 4.035 20 O -0.097 6.097 21 C -0.015 4.015 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.212 0.788 30 H 0.313 0.687 31 H 0.047 0.953 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.205 -18.183 -1.608 18.387 hybrid contribution -0.174 1.401 0.477 1.490 sum 2.031 -16.782 -1.131 16.942 Atomic orbital electron populations 1.70127 1.06352 1.25698 1.57364 1.25668 0.96552 1.01092 1.02105 0.85095 0.77658 0.78884 0.77683 1.21250 1.19360 1.21827 1.19399 0.91574 0.84051 1.42741 0.90387 1.44673 1.10205 1.00867 1.79500 1.21264 0.85044 0.92724 0.95662 1.23000 0.99426 0.95123 0.98923 1.23010 0.93141 0.84641 0.95443 0.88797 1.87976 1.82453 1.25696 1.34508 1.20820 1.01103 0.82076 0.89483 1.23190 0.91559 0.92265 1.04148 1.23428 0.97471 0.96595 0.99136 1.70497 1.25633 1.10275 1.19237 1.29249 0.81640 0.98195 0.94448 1.84445 1.41046 1.31637 1.52575 1.21915 0.96091 0.85514 0.97955 0.94100 0.97183 0.94421 0.91763 0.88706 0.87935 0.89479 0.78794 0.68735 0.95305 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.68 21.65 0.23 -56.49 16 2 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 3 Si 0.98 45.71 29.56 68.60 2.03 47.74 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.25 -14.14 10.24 84.03 0.86 -13.28 16 8 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 9 N -0.62 -32.61 3.39 -691.56 -2.35 -34.96 16 10 C 0.18 8.74 5.43 86.93 0.47 9.22 16 11 C -0.13 -4.72 6.82 32.06 0.22 -4.50 16 12 C 0.10 3.20 3.40 31.78 0.11 3.31 16 13 H 0.09 2.70 7.88 -2.39 -0.02 2.68 16 14 O -0.39 -11.98 10.05 -148.98 -1.50 -13.47 16 15 C 0.14 3.24 6.36 71.23 0.45 3.69 16 16 C -0.06 -1.42 7.02 24.79 0.17 -1.24 16 17 C -0.03 -0.69 11.80 83.40 0.98 0.29 16 18 N -0.53 -12.59 11.29 -316.05 -3.57 -16.16 16 19 C 0.19 3.31 13.23 130.48 1.73 5.04 16 20 O -0.21 -4.69 10.78 -3.77 -0.04 -4.73 16 21 C 0.11 4.58 7.02 86.73 0.61 5.18 16 22 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 23 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 24 H 0.04 2.08 6.95 -2.39 -0.02 2.07 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.09 1.66 8.11 -2.39 -0.02 1.64 16 29 H 0.20 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.30 1.48 8.06 -2.91 -0.02 1.45 16 31 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.71 277.68 1.98 -69.73 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.11 Total: 3.63 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.06 Total: 4.72 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -5.68 Total: -107.61 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.54 Total: -18.21 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.71 1.98 -69.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223172689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.241 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds