Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47587 * 270.00315 * 3 2 1 5 5 H 1.48507 * 109.47042 * 30.00717 * 3 2 1 6 6 H 1.48504 * 109.46817 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47449 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47071 * 180.02562 * 10 9 7 12 12 N 1.30271 * 126.28227 * 89.69443 * 11 10 9 13 13 N 1.28663 * 109.38268 * 180.26103 * 12 11 10 14 14 C 1.30277 * 109.37956 * 359.97438 * 13 12 11 15 15 C 1.50697 * 126.28050 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.43171 * 178.90954 * 15 14 13 17 17 C 1.54804 * 110.49069 * 56.21689 * 15 14 13 18 18 C 1.54994 * 102.09301 * 220.44047 * 17 15 14 19 19 O 1.44381 * 103.49029 * 37.02575 * 18 17 15 20 20 C 1.43743 * 106.97266 * 319.93825 * 19 18 17 21 21 O 1.34359 * 107.43658 * 0.02562 * 14 13 12 22 22 H 0.97000 * 119.99553 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46791 * 60.00342 * 9 7 2 24 24 H 1.08997 * 109.47458 * 300.00718 * 9 7 2 25 25 H 1.08998 * 109.46583 * 60.00432 * 10 9 7 26 26 H 1.08997 * 109.47202 * 300.00660 * 10 9 7 27 27 H 1.08997 * 110.91159 * 338.64265 * 17 15 14 28 28 H 1.09004 * 110.90806 * 102.25022 * 17 15 14 29 29 H 1.09001 * 110.62118 * 278.52055 * 18 17 15 30 30 H 1.09003 * 110.61466 * 155.52628 * 18 17 15 31 31 H 1.09000 * 109.87606 * 267.08974 * 20 19 18 32 32 H 1.08998 * 110.00217 * 146.00632 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0466 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 7 1.1017 -5.6317 -1.0516 13 7 0.4830 -6.6961 -0.6781 14 6 0.4576 -6.7472 0.6234 15 6 -0.1703 -7.8311 1.4612 16 1 -0.0244 -7.6250 2.5216 17 6 0.4185 -9.2135 1.0888 18 6 -0.8377 -10.1209 1.1214 19 8 -1.8793 -9.2733 0.5911 20 6 -1.6716 -7.9606 1.1387 21 8 1.0940 -5.6562 1.0816 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8895 26 1 2.8720 -3.6043 -0.8904 27 1 0.8580 -9.1933 0.0916 28 1 1.1508 -9.5365 1.8287 29 1 -1.0691 -10.4195 2.1439 30 1 -0.6953 -10.9963 0.4877 31 1 -2.2580 -7.8421 2.0498 32 1 -1.9610 -7.2029 0.4106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255557053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -22.375936 kcal Electronic energy + Delta-G solvation = -16379.018350 eV Core-core repulsion = 13534.305182 eV Total energy + Delta-G solvation = -2844.713168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.87077 -39.57373 -35.77740 -34.57061 -33.37962 -31.86244 -30.03245 -28.60838 -25.71543 -24.04775 -22.90703 -22.60969 -21.00639 -20.75541 -17.42225 -16.92544 -16.62106 -16.43814 -15.99412 -15.36257 -14.57975 -14.35901 -14.02137 -13.24943 -13.17915 -12.60959 -12.33928 -12.02382 -11.99938 -11.74428 -11.53367 -11.40497 -11.34864 -11.03994 -10.79252 -10.59025 -10.14889 -10.06791 -9.89722 -9.34625 -8.90333 -8.47918 -6.12125 -4.17314 1.48354 2.51549 2.73912 3.27086 3.33434 3.35914 3.61048 4.01191 4.23627 4.37448 4.52198 4.66780 4.77166 4.87027 4.93351 5.24363 5.36560 5.38408 5.42570 5.59382 5.63204 5.75121 5.84160 5.90023 6.15451 6.18803 6.57295 6.58055 7.44705 7.53014 7.83038 8.18261 8.68820 8.87854 9.47816 10.99169 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060202 B = 0.004340 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.992285 B = 6450.684732 C = 6634.610517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.026 4.026 11 C 0.201 3.799 12 N -0.303 5.303 13 N -0.275 5.275 14 C 0.135 3.865 15 C -0.022 4.022 16 H 0.114 0.886 17 C -0.145 4.145 18 C 0.049 3.951 19 O -0.368 6.368 20 C 0.060 3.940 21 O -0.225 6.225 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.021 0.979 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -17.038 5.777 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.064 4.064 11 C -0.009 4.009 12 N -0.149 5.149 13 N -0.122 5.122 14 C -0.076 4.076 15 C -0.042 4.042 16 H 0.132 0.868 17 C -0.183 4.183 18 C -0.028 4.028 19 O -0.287 6.287 20 C -0.017 4.017 21 O -0.105 6.105 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.044 -17.295 4.386 17.842 hybrid contribution 0.760 1.437 1.386 2.136 sum 0.716 -15.857 5.772 16.890 Atomic orbital electron populations 1.69973 1.06180 1.27022 1.49767 1.25019 0.94884 0.99479 0.94841 0.86491 0.79725 0.82924 0.78268 1.20456 1.21138 1.19713 1.21065 0.93163 0.90205 1.52112 0.92031 1.19170 0.93602 0.89878 0.98432 1.20755 0.97913 0.83518 1.04238 1.28987 0.96320 0.96967 0.78614 1.74450 1.13401 1.01556 1.25510 1.74278 1.15131 1.13919 1.08891 1.27308 0.98871 0.89614 0.91835 1.20983 0.95320 0.89462 0.98449 0.86825 1.23287 0.99010 0.91713 1.04335 1.23571 0.85486 0.94312 0.99431 1.88935 1.50540 1.19359 1.69829 1.23197 0.91982 0.86574 0.99986 1.84797 1.56387 1.30266 1.39003 0.92703 0.95380 0.96044 0.89544 0.87945 0.88955 0.89170 0.91701 0.88354 0.90737 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.69 4.95 -27.88 -0.14 0.55 16 10 C -0.03 -0.51 5.78 -27.88 -0.16 -0.67 16 11 C 0.20 4.01 7.73 -12.94 -0.10 3.91 16 12 N -0.30 -6.38 12.22 32.55 0.40 -5.98 16 13 N -0.28 -5.26 12.02 32.55 0.39 -4.87 16 14 C 0.14 2.21 6.77 -12.94 -0.09 2.12 16 15 C -0.02 -0.25 3.58 -90.25 -0.32 -0.57 16 16 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 17 C -0.15 -1.33 6.69 -24.73 -0.17 -1.50 16 18 C 0.05 0.40 7.72 38.21 0.29 0.70 16 19 O -0.37 -4.45 11.52 -35.23 -0.41 -4.86 16 20 C 0.06 0.69 7.36 37.73 0.28 0.96 16 21 O -0.22 -4.12 10.87 5.39 0.06 -4.06 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 27 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.26 7.68 -51.93 -0.40 0.87 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -32.11 280.66 -4.57 -36.69 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.14 Total: -4.01 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.81 Total: -7.52 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.53 Total: -36.43 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.35 Total: -8.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.11 -4.57 -36.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255557053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.309 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds