Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47587 * 270.00315 * 3 2 1 5 5 H 1.48507 * 109.47042 * 30.00717 * 3 2 1 6 6 H 1.48504 * 109.46817 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47449 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47071 * 180.02562 * 10 9 7 12 12 N 1.30271 * 126.28227 * 89.69443 * 11 10 9 13 13 N 1.28663 * 109.38268 * 180.26103 * 12 11 10 14 14 C 1.30277 * 109.37956 * 359.97438 * 13 12 11 15 15 C 1.50697 * 126.28050 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.43171 * 178.90954 * 15 14 13 17 17 C 1.54804 * 110.49069 * 56.21689 * 15 14 13 18 18 C 1.54994 * 102.09301 * 220.44047 * 17 15 14 19 19 O 1.44381 * 103.49029 * 37.02575 * 18 17 15 20 20 C 1.43743 * 106.97266 * 319.93825 * 19 18 17 21 21 O 1.34359 * 107.43658 * 0.02562 * 14 13 12 22 22 H 0.97000 * 119.99553 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46791 * 60.00342 * 9 7 2 24 24 H 1.08997 * 109.47458 * 300.00718 * 9 7 2 25 25 H 1.08998 * 109.46583 * 60.00432 * 10 9 7 26 26 H 1.08997 * 109.47202 * 300.00660 * 10 9 7 27 27 H 1.08997 * 110.91159 * 338.64265 * 17 15 14 28 28 H 1.09004 * 110.90806 * 102.25022 * 17 15 14 29 29 H 1.09001 * 110.62118 * 278.52055 * 18 17 15 30 30 H 1.09003 * 110.61466 * 155.52628 * 18 17 15 31 31 H 1.09000 * 109.87606 * 267.08974 * 20 19 18 32 32 H 1.08998 * 110.00217 * 146.00632 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0466 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 7 1.1017 -5.6317 -1.0516 13 7 0.4830 -6.6961 -0.6781 14 6 0.4576 -6.7472 0.6234 15 6 -0.1703 -7.8311 1.4612 16 1 -0.0244 -7.6250 2.5216 17 6 0.4185 -9.2135 1.0888 18 6 -0.8377 -10.1209 1.1214 19 8 -1.8793 -9.2733 0.5911 20 6 -1.6716 -7.9606 1.1387 21 8 1.0940 -5.6562 1.0816 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8895 26 1 2.8720 -3.6043 -0.8904 27 1 0.8580 -9.1933 0.0916 28 1 1.1508 -9.5365 1.8287 29 1 -1.0691 -10.4195 2.1439 30 1 -0.6953 -10.9963 0.4877 31 1 -2.2580 -7.8421 2.0498 32 1 -1.9610 -7.2029 0.4106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255557053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -48.168121 kcal Electronic energy + Delta-G solvation = -16380.136783 eV Core-core repulsion = 13534.305182 eV Total energy + Delta-G solvation = -2845.831601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.33386 -40.40751 -37.26371 -36.34879 -34.71508 -33.53555 -31.11577 -29.91181 -27.54841 -25.27619 -24.50750 -23.58067 -22.60389 -21.95732 -18.87655 -18.39580 -18.26732 -17.34848 -17.20754 -16.52054 -16.28082 -15.66710 -15.40901 -14.90228 -14.36144 -14.00495 -13.56655 -13.47011 -13.33513 -12.99343 -12.88912 -12.80587 -12.59482 -12.54719 -12.29327 -12.02452 -11.87594 -11.76334 -11.38746 -10.85616 -10.60824 -10.36205 -8.24073 -6.37217 0.06300 1.15961 1.24921 1.44238 1.45505 1.56596 2.40255 2.66766 2.93394 3.11116 3.33786 3.45505 3.63722 3.79303 4.03664 4.15440 4.27418 4.29246 4.45663 4.53508 4.59193 4.65113 4.68060 4.81814 4.84439 4.86468 5.04400 5.36134 5.45876 5.72602 5.81775 6.07972 6.78116 7.21032 7.33481 8.88564 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060202 B = 0.004340 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.992285 B = 6450.684732 C = 6634.610517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.034 3.966 10 C -0.011 4.011 11 C 0.188 3.812 12 N -0.328 5.328 13 N -0.309 5.309 14 C 0.158 3.842 15 C -0.026 4.026 16 H 0.149 0.851 17 C -0.140 4.140 18 C 0.047 3.953 19 O -0.396 6.396 20 C 0.061 3.939 21 O -0.228 6.228 22 H 0.265 0.735 23 H -0.009 1.009 24 H -0.004 1.004 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -17.903 7.414 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.004 4.004 10 C -0.049 4.049 11 C -0.023 4.023 12 N -0.173 5.173 13 N -0.155 5.155 14 C -0.053 4.053 15 C -0.046 4.046 16 H 0.167 0.833 17 C -0.178 4.178 18 C -0.028 4.028 19 O -0.315 6.315 20 C -0.017 4.017 21 O -0.107 6.107 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.014 0.986 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.223 -18.192 6.011 19.198 hybrid contribution 0.291 1.572 0.894 1.832 sum 1.514 -16.620 6.905 18.060 Atomic orbital electron populations 1.70124 1.08163 1.28072 1.51162 1.26041 0.95707 1.03733 0.94330 0.85324 0.78751 0.77755 0.78478 1.19938 1.21079 1.17904 1.21557 0.94174 0.90928 1.51307 0.90335 1.18956 0.93980 0.92088 0.95415 1.20490 0.96690 0.81676 1.06048 1.28801 0.97169 0.97349 0.78991 1.74378 1.13927 1.02448 1.26586 1.74225 1.16651 1.13982 1.10597 1.28428 0.96116 0.89138 0.91652 1.21502 0.94955 0.88711 0.99419 0.83298 1.23322 1.00084 0.90433 1.03963 1.23836 0.83837 0.93788 1.01351 1.88908 1.51904 1.19838 1.70840 1.23203 0.92340 0.85913 1.00229 1.84802 1.56660 1.30761 1.38516 0.92658 0.99031 0.98610 0.87072 0.86785 0.91407 0.85861 0.88606 0.87186 0.87703 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 13.29 21.45 0.28 -56.21 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.14 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.03 1.75 4.95 29.85 0.15 1.90 16 10 C -0.01 -0.43 5.78 29.85 0.17 -0.25 16 11 C 0.19 7.57 7.73 88.34 0.68 8.25 16 12 N -0.33 -14.11 12.22 -165.50 -2.02 -16.13 16 13 N -0.31 -12.02 12.02 -165.51 -1.99 -14.01 16 14 C 0.16 5.08 6.77 88.34 0.60 5.67 16 15 C -0.03 -0.52 3.58 -10.55 -0.04 -0.56 16 16 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 17 C -0.14 -2.19 6.69 31.89 0.21 -1.98 16 18 C 0.05 0.65 7.72 72.66 0.56 1.21 16 19 O -0.40 -8.98 11.52 -148.98 -1.72 -10.70 16 20 C 0.06 1.30 7.36 72.35 0.53 1.83 16 21 O -0.23 -8.21 10.87 -3.62 -0.04 -8.25 16 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 27 H 0.07 1.43 7.70 -2.39 -0.02 1.41 16 28 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.70 7.68 -2.39 -0.02 1.68 16 Total: -1.00 -71.67 280.66 1.23 -70.44 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.12 Total: 2.66 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.57 Total: -12.60 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.73 Total: -86.36 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.76 Total: -18.94 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.67 1.23 -70.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255557053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.273 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds