Wall clock time and date at job start Sun Mar 29 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30255 * 125.61814 * 2 1 4 4 C 1.34478 * 108.70259 * 179.97438 * 3 2 1 5 5 C 1.34334 * 107.66949 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44675 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46944 * 90.00074 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08999 * 109.47480 * 35.27807 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27733 * 10 9 7 13 13 C 1.50696 * 109.47278 * 155.27952 * 10 9 7 14 14 H 1.08002 * 120.00157 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00447 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99635 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 120.00210 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47485 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47198 * 120.00237 * 17 15 13 20 20 H 1.48498 * 109.47682 * 240.00190 * 17 15 13 21 21 O 1.33962 * 125.62347 * 180.28737 * 2 1 3 22 22 H 1.08999 * 109.47125 * 90.02457 * 1 2 3 23 23 H 1.09002 * 109.46976 * 210.02013 * 1 2 3 24 24 H 1.08996 * 109.47132 * 330.02146 * 1 2 3 25 25 H 1.08000 * 126.16729 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46601 * 330.00515 * 6 5 4 27 27 H 1.08993 * 109.46922 * 210.00814 * 6 5 4 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 30 30 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47169 * 299.99790 * 12 10 9 32 32 H 0.97000 * 120.00295 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 3.5698 -0.6756 0.0015 6 6 4.7937 -1.5549 0.0029 7 6 5.2007 -1.8470 1.4242 8 8 4.5597 -1.3869 2.3454 9 7 6.2764 -2.6203 1.6717 10 6 6.6756 -2.8994 3.0533 11 1 5.7865 -2.9866 3.6779 12 6 7.5527 -1.7577 3.5713 13 6 7.4515 -4.1903 3.1011 14 1 7.6292 -4.7475 2.1931 15 6 7.9347 -4.6603 4.3039 16 7 7.7188 -3.9816 5.4095 17 14 8.8959 -6.2608 4.3631 18 1 9.0007 -6.8264 2.9940 19 1 10.2574 -6.0012 4.8964 20 1 8.1946 -7.2272 5.2459 21 8 2.2873 -1.0889 -0.0055 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 4.4156 1.3163 0.0011 26 1 5.6084 -1.0443 -0.5106 27 1 4.5699 -2.4899 -0.5105 28 1 6.7889 -2.9886 0.9350 29 1 6.9915 -0.8240 3.5369 30 1 7.8501 -1.9656 4.5992 31 1 8.4418 -1.6705 2.9468 32 1 8.0584 -4.3124 6.2558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262154514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:52 Heat of formation + Delta-G solvation = -24.512890 kcal Electronic energy + Delta-G solvation = -16453.710641 eV Core-core repulsion = 13608.904808 eV Total energy + Delta-G solvation = -2844.805833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.18256 -38.91177 -34.90454 -34.60388 -33.00880 -32.39859 -30.55867 -28.71146 -25.79401 -25.26962 -22.40036 -21.52142 -20.69240 -19.50317 -17.46538 -16.84036 -16.43809 -15.66135 -15.28647 -14.89709 -14.54392 -13.89636 -13.82107 -13.25969 -12.92188 -12.89373 -12.55082 -12.45395 -12.10245 -11.64045 -11.12900 -11.11685 -10.97838 -10.77291 -10.43289 -10.33543 -10.27166 -9.25253 -9.07919 -8.59733 -8.48697 -7.98574 -6.15446 -4.25169 1.55647 2.71318 2.81594 3.21573 3.26832 3.29817 3.32215 4.03917 4.15986 4.36247 4.76263 5.08209 5.11430 5.17122 5.24855 5.34656 5.40564 5.51772 5.57536 5.94892 6.14066 6.45297 6.78883 6.92546 7.11067 7.39442 7.50768 7.65282 7.83948 7.87307 8.11319 8.58191 8.73417 9.03956 9.42432 10.90593 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.052659 B = 0.004670 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.591882 B = 5994.055207 C = 6058.322910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.180 3.820 3 N -0.484 5.484 4 C -0.033 4.033 5 C -0.013 4.013 6 C -0.061 4.061 7 C 0.501 3.499 8 O -0.546 6.546 9 N -0.706 5.706 10 C 0.264 3.736 11 H 0.048 0.952 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 O -0.197 6.197 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.181 0.819 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.390 0.610 29 H 0.015 0.985 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 4.659 -12.374 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.026 4.026 3 N -0.215 5.215 4 C -0.171 4.171 5 C -0.067 4.067 6 C -0.102 4.102 7 C 0.284 3.716 8 O -0.424 6.424 9 N -0.354 5.354 10 C 0.162 3.838 11 H 0.066 0.934 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 O -0.084 6.084 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.198 0.802 26 H 0.140 0.860 27 H 0.127 0.873 28 H 0.223 0.777 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.230 5.529 -11.473 15.164 hybrid contribution 1.231 -1.684 -0.193 2.094 sum -7.000 3.846 -11.667 14.138 Atomic orbital electron populations 1.20200 0.81582 1.05073 1.04252 1.26161 0.96362 0.78802 1.01313 1.70374 1.02128 1.30367 1.18591 1.22919 0.94984 0.92831 1.06371 1.22608 0.83108 0.94888 1.06062 1.20193 0.91762 1.00234 0.98000 1.20137 0.81709 0.80035 0.89686 1.90707 1.53781 1.51922 1.45965 1.46495 1.28000 1.49215 1.11722 1.18779 0.95156 0.93455 0.76400 0.93387 1.22080 0.98168 0.96313 1.04016 1.21245 1.35589 1.06162 0.94283 0.91948 1.24899 0.95931 0.97552 0.95362 1.69912 1.45221 1.38300 0.98601 0.86378 0.79534 0.82917 0.78173 1.19716 1.20845 1.20860 1.84344 1.16632 1.37704 1.69716 0.89251 0.89428 0.88282 0.80153 0.85997 0.87332 0.77737 0.96637 0.89100 0.95387 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.51 36.00 0.38 -0.10 16 2 C 0.18 2.62 8.34 -12.95 -0.11 2.51 16 3 N -0.48 -7.85 11.29 -11.10 -0.13 -7.97 16 4 C -0.03 -0.51 11.80 -17.77 -0.21 -0.72 16 5 C -0.01 -0.21 5.88 -35.69 -0.21 -0.42 16 6 C -0.06 -0.84 6.25 -29.04 -0.18 -1.02 16 7 C 0.50 9.78 7.78 -10.99 -0.09 9.69 16 8 O -0.55 -13.36 15.70 5.55 0.09 -13.27 16 9 N -0.71 -14.20 5.07 -54.93 -0.28 -14.48 16 10 C 0.26 6.66 2.56 -69.08 -0.18 6.49 16 11 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 12 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 13 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.83 11.32 55.43 0.63 -24.20 16 17 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 O -0.20 -3.21 10.77 5.37 0.06 -3.15 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 26 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -33.85 284.72 -4.99 -38.84 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.98 Total: 4.03 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.64 Total: 0.50 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.22 Total: -46.65 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.15 Total: -16.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.85 -4.99 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.326 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds