Wall clock time and date at job start Sun Mar 29 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30255 * 125.61814 * 2 1 4 4 C 1.34478 * 108.70259 * 179.97438 * 3 2 1 5 5 C 1.34334 * 107.66949 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44675 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46944 * 90.00074 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08999 * 109.47480 * 35.27807 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27733 * 10 9 7 13 13 C 1.50696 * 109.47278 * 155.27952 * 10 9 7 14 14 H 1.08002 * 120.00157 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00447 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99635 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 120.00210 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47485 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47198 * 120.00237 * 17 15 13 20 20 H 1.48498 * 109.47682 * 240.00190 * 17 15 13 21 21 O 1.33962 * 125.62347 * 180.28737 * 2 1 3 22 22 H 1.08999 * 109.47125 * 90.02457 * 1 2 3 23 23 H 1.09002 * 109.46976 * 210.02013 * 1 2 3 24 24 H 1.08996 * 109.47132 * 330.02146 * 1 2 3 25 25 H 1.08000 * 126.16729 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46601 * 330.00515 * 6 5 4 27 27 H 1.08993 * 109.46922 * 210.00814 * 6 5 4 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 30 30 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47169 * 299.99790 * 12 10 9 32 32 H 0.97000 * 120.00295 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 3.5698 -0.6756 0.0015 6 6 4.7937 -1.5549 0.0029 7 6 5.2007 -1.8470 1.4242 8 8 4.5597 -1.3869 2.3454 9 7 6.2764 -2.6203 1.6717 10 6 6.6756 -2.8994 3.0533 11 1 5.7865 -2.9866 3.6779 12 6 7.5527 -1.7577 3.5713 13 6 7.4515 -4.1903 3.1011 14 1 7.6292 -4.7475 2.1931 15 6 7.9347 -4.6603 4.3039 16 7 7.7188 -3.9816 5.4095 17 14 8.8959 -6.2608 4.3631 18 1 9.0007 -6.8264 2.9940 19 1 10.2574 -6.0012 4.8964 20 1 8.1946 -7.2272 5.2459 21 8 2.2873 -1.0889 -0.0055 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 4.4156 1.3163 0.0011 26 1 5.6084 -1.0443 -0.5106 27 1 4.5699 -2.4899 -0.5105 28 1 6.7889 -2.9886 0.9350 29 1 6.9915 -0.8240 3.5369 30 1 7.8501 -1.9656 4.5992 31 1 8.4418 -1.6705 2.9468 32 1 8.0584 -4.3124 6.2558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262154514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:52 Heat of formation + Delta-G solvation = -51.229203 kcal Electronic energy + Delta-G solvation = -16454.869147 eV Core-core repulsion = 13608.904808 eV Total energy + Delta-G solvation = -2845.964339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.31648 -40.55697 -36.78199 -35.76277 -34.42511 -34.03150 -31.76842 -30.35506 -27.36671 -26.90600 -23.72916 -22.99341 -22.03270 -21.19496 -19.10056 -18.02243 -17.87529 -17.21020 -17.09611 -16.27455 -16.10253 -15.31037 -14.92477 -14.74263 -14.37397 -14.02824 -13.85619 -13.73040 -13.34878 -13.14746 -12.98137 -12.81636 -12.71038 -12.28664 -12.28102 -12.11482 -11.59966 -11.10319 -10.90906 -10.61207 -9.79284 -9.64630 -8.18170 -6.36011 0.41123 1.44968 1.46014 1.57945 1.62830 1.70402 1.76236 2.36767 2.67954 3.12752 3.17130 3.64828 4.02069 4.09975 4.17504 4.39614 4.64174 4.66576 4.68372 4.75337 4.91256 5.03010 5.03456 5.08741 5.40349 5.42518 5.59627 5.67596 5.89183 6.08882 6.70919 6.72538 6.91869 7.31822 7.53088 8.88449 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.052659 B = 0.004670 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.591882 B = 5994.055207 C = 6058.322910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.180 3.820 3 N -0.516 5.516 4 C -0.043 4.043 5 C -0.037 4.037 6 C -0.043 4.043 7 C 0.497 3.503 8 O -0.602 6.602 9 N -0.699 5.699 10 C 0.269 3.731 11 H -0.006 1.006 12 C -0.134 4.134 13 C -0.545 4.545 14 H 0.078 0.922 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.974 3.026 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.286 1.286 21 O -0.214 6.214 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.199 0.801 26 H 0.167 0.833 27 H 0.139 0.861 28 H 0.411 0.589 29 H 0.010 0.990 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 3.856 -14.525 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.027 4.027 3 N -0.246 5.246 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.083 4.083 7 C 0.284 3.716 8 O -0.484 6.484 9 N -0.349 5.349 10 C 0.165 3.835 11 H 0.012 0.988 12 C -0.192 4.192 13 C -0.583 4.583 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.799 3.201 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.212 1.212 21 O -0.102 6.102 22 H 0.136 0.864 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.216 0.784 26 H 0.184 0.816 27 H 0.157 0.843 28 H 0.247 0.753 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.902 4.725 -13.685 16.493 hybrid contribution 1.036 -1.370 0.487 1.786 sum -6.866 3.354 -13.197 15.250 Atomic orbital electron populations 1.20528 0.78073 1.06159 1.06386 1.27324 0.98173 0.78098 0.99064 1.70398 1.02687 1.31280 1.20222 1.23345 0.95569 0.93375 1.05773 1.22973 0.83578 0.95363 1.07098 1.20215 0.92269 1.02066 0.93728 1.21121 0.80347 0.78332 0.91787 1.90685 1.55330 1.53846 1.48530 1.46191 1.28761 1.49591 1.10325 1.18355 0.92858 0.93801 0.78467 0.98826 1.21895 0.98624 0.95915 1.02805 1.21594 1.35250 1.06527 0.94950 0.90422 1.25834 0.96935 1.01002 0.94981 1.70069 1.46353 1.40143 0.99245 0.85265 0.77786 0.78391 0.78692 1.18062 1.20494 1.21178 1.84348 1.17153 1.38572 1.70106 0.86438 0.88171 0.87258 0.78432 0.81575 0.84306 0.75344 0.97061 0.91707 0.93619 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.86 10.51 71.24 0.75 -0.11 16 2 C 0.18 5.04 8.34 88.34 0.74 5.78 16 3 N -0.52 -16.35 11.29 -303.83 -3.43 -19.78 16 4 C -0.04 -1.30 11.80 83.40 0.98 -0.32 16 5 C -0.04 -1.13 5.88 24.79 0.15 -0.98 16 6 C -0.04 -1.07 6.25 29.10 0.18 -0.89 16 7 C 0.50 19.05 7.78 87.66 0.68 19.73 16 8 O -0.60 -30.16 15.70 -3.04 -0.05 -30.21 16 9 N -0.70 -27.43 5.07 -446.09 -2.26 -29.69 16 10 C 0.27 13.79 2.56 44.25 0.11 13.90 16 11 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 12 C -0.13 -6.72 9.26 71.98 0.67 -6.06 16 13 C -0.55 -28.29 8.73 25.60 0.22 -28.06 16 14 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 15 C 0.01 0.66 5.30 84.66 0.45 1.10 16 16 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 17 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 21 O -0.21 -6.77 10.77 -3.70 -0.04 -6.81 16 22 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.20 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.17 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.41 12.67 8.54 -92.71 -0.79 11.88 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 3.60 6.07 -2.38 -0.01 3.59 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -76.12 284.72 1.76 -74.36 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.34 Total: 17.14 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.93 Total: 4.09 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.45 Total: -102.01 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.09 Total: -37.02 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -76.12 1.76 -74.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.130 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds