Wall clock time and date at job start Sun Mar 29 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46883 * 324.99249 * 10 9 7 12 12 C 1.52995 * 109.47095 * 84.99719 * 10 9 7 13 13 C 1.50704 * 109.46872 * 204.99850 * 10 9 7 14 14 H 1.08001 * 119.99811 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00051 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00245 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48492 * 109.47425 * 89.99585 * 17 15 13 19 19 H 1.48503 * 109.46947 * 210.00234 * 17 15 13 20 20 H 1.48509 * 109.46888 * 329.99657 * 17 15 13 21 21 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 23 23 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 24 24 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 25 25 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 27 27 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 28 28 H 0.96999 * 119.99679 * 359.97438 * 9 7 6 29 29 H 1.09003 * 109.47147 * 299.99350 * 12 10 9 30 30 H 1.08998 * 109.47210 * 60.00257 * 12 10 9 31 31 H 1.09006 * 109.47093 * 179.97438 * 12 10 9 32 32 H 0.97000 * 120.00269 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 6.6840 -2.9180 3.0247 11 1 6.4834 -2.0493 3.6519 12 6 5.8894 -4.1173 3.5452 13 6 8.1566 -3.2361 3.0632 14 1 8.7357 -3.2237 2.1517 15 6 8.7645 -3.5428 4.2621 16 7 10.0494 -3.8209 4.2956 17 14 7.7626 -3.5649 5.8386 18 1 7.2101 -4.9261 6.0550 19 1 8.6334 -3.1962 6.9836 20 1 6.6479 -2.5896 5.7303 21 8 2.2872 -1.0891 0.0005 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 4.4157 1.3161 0.0003 26 1 4.5680 -2.4877 -0.5294 27 1 5.6065 -1.0421 -0.5265 28 1 6.7927 -2.9924 0.9055 29 1 4.8243 -3.8872 3.5175 30 1 6.0900 -4.9859 2.9181 31 1 6.1880 -4.3335 4.5710 32 1 10.4772 -4.0363 5.1391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262154515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:55 Heat of formation + Delta-G solvation = -16.173685 kcal Electronic energy + Delta-G solvation = -16528.158518 eV Core-core repulsion = 13683.714300 eV Total energy + Delta-G solvation = -2844.444218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.25341 -39.12010 -35.13769 -34.67410 -33.10446 -32.42059 -30.83116 -29.45980 -25.95310 -25.19166 -22.48736 -21.64354 -20.75815 -19.70337 -17.58267 -16.91186 -16.58245 -15.81962 -15.70882 -15.01490 -14.53567 -13.98663 -13.90988 -13.29189 -13.16638 -12.98022 -12.88831 -12.62838 -12.23773 -12.15098 -11.78708 -11.26951 -11.18499 -10.85109 -10.49894 -10.22532 -9.76801 -9.35565 -9.27669 -8.79921 -8.56983 -8.24152 -6.24426 -4.27412 1.48121 2.63296 2.75095 3.09783 3.21336 3.33565 3.38115 3.90148 4.08298 4.28869 4.68415 5.00753 5.03873 5.10732 5.18830 5.26781 5.28223 5.43503 5.49886 5.87889 6.05857 6.26890 6.33464 6.39024 6.51745 6.81198 7.13181 7.21807 7.46466 7.77356 8.07764 8.45068 8.70546 8.83543 9.36222 10.87644 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049443 B = 0.005132 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.176751 B = 5454.666352 C = 5663.115148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.181 3.819 3 N -0.484 5.484 4 C -0.030 4.030 5 C -0.016 4.016 6 C -0.060 4.060 7 C 0.503 3.497 8 O -0.547 6.547 9 N -0.699 5.699 10 C 0.236 3.764 11 H 0.049 0.951 12 C -0.161 4.161 13 C -0.536 4.536 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.892 5.892 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.262 1.262 21 O -0.197 6.197 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.182 0.818 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.397 0.603 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 3.771 -10.409 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.026 4.026 3 N -0.214 5.214 4 C -0.168 4.168 5 C -0.070 4.070 6 C -0.100 4.100 7 C 0.287 3.713 8 O -0.425 6.425 9 N -0.347 5.347 10 C 0.133 3.867 11 H 0.067 0.933 12 C -0.220 4.220 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.187 1.187 21 O -0.084 6.084 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.200 0.800 26 H 0.128 0.872 27 H 0.143 0.857 28 H 0.231 0.769 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.563 4.601 -9.602 18.040 hybrid contribution 0.305 -0.997 0.598 1.202 sum -14.258 3.604 -9.004 17.244 Atomic orbital electron populations 1.20207 0.81554 1.05053 1.04316 1.26177 0.96364 0.78792 1.01228 1.70387 1.02140 1.30356 1.18556 1.22954 0.95007 0.92857 1.06026 1.22583 0.83079 0.94890 1.06414 1.20157 0.91908 1.00389 0.97559 1.20204 0.81552 0.79567 0.89985 1.90704 1.53780 1.52387 1.45622 1.46150 1.27935 1.49685 1.10928 1.19128 0.94660 0.94161 0.78736 0.93334 1.22452 0.98589 1.00476 1.00440 1.21025 0.90859 1.49192 0.96339 0.90103 1.24819 0.94847 0.93950 0.98845 1.69860 1.09858 1.46075 1.27041 0.86883 0.79944 0.78905 0.82806 1.20273 1.22075 1.18713 1.84342 1.16617 1.37712 1.69779 0.89183 0.89458 0.88268 0.80046 0.87174 0.85660 0.76950 0.94606 0.92744 0.93394 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.44 10.51 36.01 0.38 -0.07 16 2 C 0.18 2.50 8.34 -12.95 -0.11 2.39 16 3 N -0.48 -7.56 11.29 -11.10 -0.13 -7.68 16 4 C -0.03 -0.45 11.80 -17.77 -0.21 -0.66 16 5 C -0.02 -0.24 5.88 -35.69 -0.21 -0.45 16 6 C -0.06 -0.77 6.25 -29.04 -0.18 -0.95 16 7 C 0.50 9.18 7.79 -10.98 -0.09 9.10 16 8 O -0.55 -12.51 15.70 5.56 0.09 -12.42 16 9 N -0.70 -13.26 5.07 -54.93 -0.28 -13.54 16 10 C 0.24 5.58 2.15 -69.08 -0.15 5.43 16 11 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 12 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 13 C -0.54 -14.27 9.31 -34.44 -0.32 -14.59 16 14 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 15 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 16 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 17 Si 0.88 21.72 24.37 -169.99 -4.14 17.58 16 18 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 21 O -0.20 -3.04 10.78 5.35 0.06 -2.98 16 22 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.40 6.34 8.54 -40.82 -0.35 5.99 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -34.57 277.91 -3.94 -38.50 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.84 Total: 2.71 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.65 Total: -0.96 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.37 Total: -46.61 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.14 Total: -15.40 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.57 -3.94 -38.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.328 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds