Wall clock time and date at job start Sun Mar 29 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46883 * 324.99249 * 10 9 7 12 12 C 1.52995 * 109.47095 * 84.99719 * 10 9 7 13 13 C 1.50704 * 109.46872 * 204.99850 * 10 9 7 14 14 H 1.08001 * 119.99811 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00051 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00245 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48492 * 109.47425 * 89.99585 * 17 15 13 19 19 H 1.48503 * 109.46947 * 210.00234 * 17 15 13 20 20 H 1.48509 * 109.46888 * 329.99657 * 17 15 13 21 21 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 23 23 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 24 24 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 25 25 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 27 27 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 28 28 H 0.96999 * 119.99679 * 359.97438 * 9 7 6 29 29 H 1.09003 * 109.47147 * 299.99350 * 12 10 9 30 30 H 1.08998 * 109.47210 * 60.00257 * 12 10 9 31 31 H 1.09006 * 109.47093 * 179.97438 * 12 10 9 32 32 H 0.97000 * 120.00269 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 6.6840 -2.9180 3.0247 11 1 6.4834 -2.0493 3.6519 12 6 5.8894 -4.1173 3.5452 13 6 8.1566 -3.2361 3.0632 14 1 8.7357 -3.2237 2.1517 15 6 8.7645 -3.5428 4.2621 16 7 10.0494 -3.8209 4.2956 17 14 7.7626 -3.5649 5.8386 18 1 7.2101 -4.9261 6.0550 19 1 8.6334 -3.1962 6.9836 20 1 6.6479 -2.5896 5.7303 21 8 2.2872 -1.0891 0.0005 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 4.4157 1.3161 0.0003 26 1 4.5680 -2.4877 -0.5294 27 1 5.6065 -1.0421 -0.5265 28 1 6.7927 -2.9924 0.9055 29 1 4.8243 -3.8872 3.5175 30 1 6.0900 -4.9859 2.9181 31 1 6.1880 -4.3335 4.5710 32 1 10.4772 -4.0363 5.1391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262154515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:54 Heat of formation + Delta-G solvation = -44.605162 kcal Electronic energy + Delta-G solvation = -16529.391399 eV Core-core repulsion = 13683.714300 eV Total energy + Delta-G solvation = -2845.677099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.32017 -40.65770 -36.91964 -35.76616 -34.47249 -34.10327 -32.16739 -30.78216 -27.28163 -26.93955 -23.76113 -23.02512 -22.01974 -21.28202 -19.24146 -18.07529 -18.01143 -17.43305 -17.23541 -16.30021 -16.12064 -15.32915 -15.10156 -14.85941 -14.66360 -14.18557 -14.06135 -13.80652 -13.67200 -13.39482 -13.28145 -12.92824 -12.80284 -12.28716 -12.16176 -11.65254 -11.59695 -11.29578 -10.94577 -10.87435 -9.92670 -9.65763 -8.39080 -6.44620 0.40561 1.25794 1.34667 1.43338 1.60848 1.66999 1.72043 2.24874 2.51237 2.97376 3.16680 3.63775 3.95906 4.06911 4.16745 4.40037 4.43774 4.53598 4.64327 4.66538 4.68384 4.70763 4.96888 5.02804 5.04061 5.30558 5.39982 5.40958 5.60993 6.12242 6.57495 6.70845 6.82350 7.18252 7.41154 8.75960 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049443 B = 0.005132 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.176751 B = 5454.666352 C = 5663.115148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.182 3.818 3 N -0.517 5.517 4 C -0.044 4.044 5 C -0.036 4.036 6 C -0.044 4.044 7 C 0.502 3.498 8 O -0.596 6.596 9 N -0.695 5.695 10 C 0.241 3.759 11 H 0.020 0.980 12 C -0.155 4.155 13 C -0.532 4.532 14 H 0.063 0.937 15 C 0.032 3.968 16 N -0.932 5.932 17 Si 0.935 3.065 18 H -0.260 1.260 19 H -0.292 1.292 20 H -0.267 1.267 21 O -0.211 6.211 22 H 0.117 0.883 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.197 0.803 26 H 0.143 0.857 27 H 0.163 0.837 28 H 0.413 0.587 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 3.417 -11.389 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 N -0.247 5.247 4 C -0.182 4.182 5 C -0.089 4.089 6 C -0.084 4.084 7 C 0.289 3.711 8 O -0.478 6.478 9 N -0.344 5.344 10 C 0.136 3.864 11 H 0.037 0.963 12 C -0.214 4.214 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.168 4.168 16 N -0.571 5.571 17 Si 0.763 3.237 18 H -0.185 1.185 19 H -0.220 1.220 20 H -0.192 1.192 21 O -0.099 6.099 22 H 0.135 0.865 23 H 0.120 0.880 24 H 0.127 0.873 25 H 0.214 0.786 26 H 0.161 0.839 27 H 0.181 0.819 28 H 0.249 0.751 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.097 4.238 -10.624 19.747 hybrid contribution 0.745 -0.822 0.833 1.387 sum -15.352 3.416 -9.791 18.526 Atomic orbital electron populations 1.20533 0.78062 1.06201 1.06373 1.27317 0.98136 0.78087 0.98945 1.70406 1.02701 1.31383 1.20249 1.23345 0.95536 0.93509 1.05764 1.22922 0.83587 0.95227 1.07174 1.20200 0.92175 1.02227 0.93755 1.21073 0.80200 0.77884 0.91895 1.90684 1.55186 1.54007 1.47874 1.45939 1.28677 1.50201 1.09629 1.18762 0.93059 0.93561 0.81057 0.96257 1.22347 0.98632 1.00238 1.00135 1.21252 0.92391 1.47790 0.95547 0.91925 1.25499 0.95572 0.94027 1.01745 1.69959 1.11321 1.47858 1.27925 0.86059 0.78485 0.79501 0.79622 1.18528 1.21965 1.19201 1.84348 1.17026 1.38446 1.70112 0.86524 0.88000 0.87324 0.78648 0.83890 0.81904 0.75059 0.93926 0.91251 0.94227 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 10.51 71.24 0.75 -0.02 16 2 C 0.18 4.74 8.34 88.34 0.74 5.48 16 3 N -0.52 -15.66 11.29 -303.82 -3.43 -19.09 16 4 C -0.04 -1.27 11.80 83.39 0.98 -0.29 16 5 C -0.04 -1.02 5.88 24.79 0.15 -0.88 16 6 C -0.04 -1.00 6.25 29.10 0.18 -0.82 16 7 C 0.50 17.53 7.79 87.66 0.68 18.22 16 8 O -0.60 -27.00 15.70 -3.04 -0.05 -27.04 16 9 N -0.69 -25.32 5.07 -446.08 -2.26 -27.58 16 10 C 0.24 11.18 2.15 44.24 0.10 11.28 16 11 H 0.02 1.03 6.63 -2.39 -0.02 1.01 16 12 C -0.16 -6.68 8.96 71.98 0.65 -6.04 16 13 C -0.53 -28.24 9.31 25.60 0.24 -28.01 16 14 H 0.06 3.49 7.98 -2.91 -0.02 3.46 16 15 C 0.03 1.76 5.45 84.65 0.46 2.22 16 16 N -0.93 -55.06 13.96 21.44 0.30 -54.76 16 17 Si 0.94 44.57 24.37 68.60 1.67 46.25 16 18 H -0.26 -11.61 6.87 99.48 0.68 -10.92 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 20 H -0.27 -12.83 6.53 99.48 0.65 -12.18 16 21 O -0.21 -6.17 10.78 -3.76 -0.04 -6.21 16 22 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.20 4.75 8.06 -2.91 -0.02 4.72 16 26 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.16 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.41 12.33 8.54 -92.71 -0.79 11.54 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.04 1.75 3.27 -2.38 -0.01 1.75 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.40 277.91 1.38 -74.02 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.27 Total: 13.28 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 4.92 Total: 1.14 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.39 Total: -101.43 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.09 Total: -33.26 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.67 Total: 46.25 kcal Total: -75.40 1.38 -74.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds