Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48508 * 109.46976 * 269.99586 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47229 * 150.00217 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46869 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 7 13 13 C 1.47248 * 135.90050 * 359.91309 * 12 10 9 14 14 C 1.52864 * 87.60451 * 153.80825 * 13 12 10 15 15 C 1.52092 * 129.76500 * 164.46368 * 14 13 12 16 16 C 1.52097 * 129.98715 * 246.49700 * 14 13 12 17 17 H 1.08998 * 117.51908 * 348.49431 * 16 14 13 18 18 C 1.50700 * 117.52444 * 133.60104 * 16 14 13 19 19 N 1.34774 * 119.99733 * 180.02562 * 18 16 14 20 20 O 1.21279 * 119.99942 * 359.97438 * 18 16 14 21 21 C 1.47249 * 135.90161 * 180.27589 * 12 10 9 22 22 H 0.97009 * 119.99880 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47210 * 60.00159 * 9 7 2 24 24 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 25 25 H 1.09008 * 113.51570 * 268.47035 * 13 12 10 26 26 H 1.09001 * 113.51626 * 39.05723 * 13 12 10 27 27 H 1.08998 * 117.52563 * 226.73446 * 15 14 13 28 28 H 1.08998 * 117.52157 * 11.88795 * 15 14 13 29 29 H 0.97001 * 120.00533 * 359.97438 * 19 18 16 30 30 H 0.97001 * 120.00138 * 180.02562 * 19 18 16 31 31 H 1.09007 * 113.51515 * 320.94153 * 21 12 10 32 32 H 1.09000 * 113.51540 * 91.45942 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7809 -4.9152 0.0062 13 6 0.4624 -5.5706 0.0146 14 6 1.1261 -6.7712 -0.6597 15 6 0.6224 -8.1970 -0.8222 16 6 0.9276 -7.3412 -2.0558 17 1 0.0815 -6.9716 -2.6351 18 6 2.1616 -7.6812 -2.8512 19 7 2.0435 -8.1888 -4.0941 20 8 3.2609 -7.4971 -2.3732 21 6 2.3945 -6.2538 0.0130 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 0.0898 -5.7854 1.0163 26 1 -0.2757 -5.0708 -0.6127 27 1 1.3142 -9.0056 -0.5864 28 1 -0.4248 -8.3908 -0.5901 29 1 1.1643 -8.3357 -4.4766 30 1 2.8378 -8.4080 -4.6060 31 1 3.2819 -6.3287 -0.6157 32 1 2.5517 -6.6550 1.0143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023847.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -40.083816 kcal Electronic energy + Delta-G solvation = -16573.545234 eV Core-core repulsion = 13728.064195 eV Total energy + Delta-G solvation = -2845.481039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78817 -40.24109 -38.86681 -35.55387 -35.14146 -34.54183 -31.40722 -28.72822 -27.07764 -25.51021 -25.01316 -21.67306 -20.58768 -19.64338 -18.61229 -18.09104 -17.82276 -17.44468 -16.90016 -16.76175 -16.08417 -15.78722 -15.22435 -15.01929 -14.77498 -14.24117 -14.06678 -13.34667 -13.27949 -13.13221 -12.79372 -12.61197 -12.06750 -11.88009 -11.61479 -11.46395 -11.24513 -10.83975 -10.65816 -10.65284 -10.45049 -9.62859 -8.28584 -6.36555 1.37656 1.39222 1.47754 1.52050 1.79915 1.97119 2.41395 2.45354 2.83765 3.05972 3.27462 3.45858 3.90948 3.96245 4.20095 4.41030 4.50596 4.57872 4.63130 4.85779 4.89256 4.91699 4.97934 5.12508 5.17042 5.21362 5.69587 5.90963 6.05224 6.48469 6.70576 6.86749 7.30134 7.37938 7.40641 8.83718 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037421 B = 0.005288 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.065359 B = 5293.887342 C = 5436.202358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.049 0.951 9 C 0.025 3.975 10 C 0.539 3.461 11 O -0.596 6.596 12 N -0.662 5.662 13 C 0.147 3.853 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.164 4.164 17 H 0.159 0.841 18 C 0.534 3.466 19 N -0.832 5.832 20 O -0.591 6.591 21 C 0.124 3.876 22 H 0.269 0.731 23 H 0.039 0.961 24 H 0.043 0.957 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.153 0.847 29 H 0.420 0.580 30 H 0.406 0.594 31 H 0.061 0.939 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 -20.517 -5.667 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.068 0.932 9 C -0.014 4.014 10 C 0.332 3.668 11 O -0.476 6.476 12 N -0.398 5.398 13 C 0.025 3.975 14 C -0.162 4.162 15 C -0.115 4.115 16 C -0.185 4.185 17 H 0.176 0.824 18 C 0.320 3.680 19 N -0.395 5.395 20 O -0.472 6.472 21 C 0.002 3.998 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.171 0.829 29 H 0.252 0.748 30 H 0.237 0.763 31 H 0.080 0.920 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.627 -19.870 -5.231 21.303 hybrid contribution 0.688 0.952 -0.481 1.269 sum -4.939 -18.918 -5.712 20.369 Atomic orbital electron populations 1.70022 1.07020 1.28251 1.50757 1.25780 0.95941 1.02642 0.94161 0.85432 0.78409 0.78399 0.78694 1.19536 1.19221 1.20214 1.21352 0.93533 0.91392 1.51882 0.93222 1.18942 0.93798 0.90084 0.98585 1.21295 0.89564 0.82686 0.73268 1.90506 1.19826 1.84577 1.52735 1.49862 1.12542 1.03812 1.73578 1.22674 0.85739 0.87369 1.01707 1.21875 0.97545 0.97776 0.99004 1.23014 1.04885 0.90208 0.93352 1.22258 0.98559 1.07063 0.90585 0.82378 1.20180 0.89618 0.75535 0.82634 1.43629 1.13865 1.66104 1.15936 1.90737 1.30148 1.54905 1.71369 1.22555 0.97273 0.79635 1.00301 0.92165 0.94287 0.93924 0.86401 0.89478 0.87346 0.82891 0.74794 0.76250 0.92010 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.97 46.84 29.54 68.60 2.03 48.87 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.54 -34.11 8.92 25.60 0.23 -33.88 16 8 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 9 C 0.03 1.41 5.28 29.10 0.15 1.56 16 10 C 0.54 28.66 8.07 87.66 0.71 29.37 16 11 O -0.60 -36.87 16.23 -3.04 -0.05 -36.92 16 12 N -0.66 -26.84 3.69 -855.55 -3.16 -30.00 16 13 C 0.15 3.89 8.44 83.72 0.71 4.60 16 14 C -0.16 -3.71 3.15 -52.95 -0.17 -3.88 16 15 C -0.08 -0.94 10.24 30.36 0.31 -0.63 16 16 C -0.16 -2.90 6.19 -11.77 -0.07 -2.97 16 17 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.53 12.38 7.89 87.66 0.69 13.07 16 19 N -0.83 -11.04 8.87 -173.54 -1.54 -12.58 16 20 O -0.59 -20.63 15.09 -3.03 -0.05 -20.67 16 21 C 0.12 4.22 8.20 83.64 0.69 4.91 16 22 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 23 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.04 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.42 2.29 8.83 -92.71 -0.82 1.47 16 30 H 0.41 5.01 8.93 -92.71 -0.83 4.18 16 31 H 0.06 2.56 5.98 -2.38 -0.01 2.55 16 32 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -87.92 283.81 0.74 -87.18 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -0.49 Total: 5.30 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 3.71 Total: 13.43 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.41 Total: -97.18 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.09 Total: -57.60 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -87.92 0.74 -87.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023847.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.096 kcal (2) G-P(sol) polarization free energy of solvation -87.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds