Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48501 * 109.46994 * 90.00557 * 3 2 1 5 5 H 1.48505 * 109.47526 * 209.99961 * 3 2 1 6 6 H 1.48496 * 109.47374 * 330.00579 * 3 2 1 7 7 C 1.37882 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47408 * 180.02562 * 9 7 2 11 11 O 1.21277 * 119.99866 * 0.02562 * 10 9 7 12 12 N 1.34769 * 120.00253 * 179.97438 * 10 9 7 13 13 C 1.48104 * 126.94636 * 355.29719 * 12 10 9 14 14 C 1.55128 * 103.17630 * 219.43327 * 13 12 10 15 15 C 1.54710 * 102.53102 * 321.99901 * 14 13 12 16 16 H 1.09000 * 117.82315 * 163.10244 * 15 14 13 17 17 C 1.53121 * 118.02511 * 319.69934 * 15 14 13 18 18 C 1.47381 * 126.94895 * 175.60892 * 12 10 9 19 19 C 1.50703 * 117.17963 * 15.70651 * 18 12 10 20 20 N 1.34776 * 119.99780 * 40.48764 * 19 18 12 21 21 O 1.21278 * 120.00067 * 220.48663 * 19 18 12 22 22 H 0.97004 * 119.99400 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47302 * 300.00713 * 9 7 2 24 24 H 1.09008 * 109.46643 * 60.00312 * 9 7 2 25 25 H 1.08997 * 110.65629 * 337.49167 * 13 12 10 26 26 H 1.09002 * 110.66176 * 100.60631 * 13 12 10 27 27 H 1.08997 * 110.33145 * 203.98746 * 14 13 12 28 28 H 1.08995 * 111.51622 * 80.55630 * 14 13 12 29 29 H 1.09004 * 117.45479 * 344.10561 * 17 15 14 30 30 H 1.08999 * 117.45444 * 199.33503 * 17 15 14 31 31 H 0.96995 * 119.99897 * 5.17537 * 20 19 18 32 32 H 0.97002 * 119.99712 * 185.17211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4228 -3.4230 -0.0001 12 7 1.7812 -4.9152 0.0000 13 6 0.3724 -5.3613 0.0976 14 6 0.4586 -6.6058 1.0198 15 6 1.7759 -7.2739 0.5597 16 1 2.2292 -8.0130 1.2202 17 6 2.0813 -7.3046 -0.9405 18 6 2.5932 -6.1419 -0.0901 19 6 4.0717 -6.0095 0.1697 20 7 4.5126 -5.2116 1.1624 21 8 4.8648 -6.6208 -0.5145 22 1 -0.4849 -0.8401 0.0004 23 1 0.6247 -2.5571 0.8896 24 1 0.6242 -2.5567 -0.8904 25 1 -0.2442 -4.5896 0.5584 26 1 -0.0153 -5.6290 -0.8853 27 1 -0.3910 -7.2660 0.8454 28 1 0.5159 -6.3215 2.0705 29 1 1.2577 -7.1020 -1.6252 30 1 2.8137 -8.0326 -1.2894 31 1 3.8783 -4.7817 1.7571 32 1 5.4643 -5.0672 1.2821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -35.408987 kcal Electronic energy + Delta-G solvation = -17365.322492 eV Core-core repulsion = 14520.044169 eV Total energy + Delta-G solvation = -2845.278323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88661 -38.29588 -37.66982 -33.48974 -33.15893 -32.67126 -30.16758 -28.54219 -24.46750 -24.18275 -23.04539 -21.05597 -19.98384 -18.67977 -17.26586 -16.75616 -16.61278 -15.88978 -15.33360 -14.64852 -14.58879 -13.99743 -13.75591 -13.60407 -13.14539 -12.88426 -12.67181 -12.09403 -11.96862 -11.48130 -11.19435 -10.78362 -10.73276 -10.64735 -10.48481 -10.11201 -9.69216 -9.40725 -8.88985 -8.66121 -8.46258 -8.25112 -6.46372 -4.16296 2.47897 3.25279 3.32638 3.42899 3.47207 3.64308 3.67631 3.80166 4.39279 4.49790 4.56590 4.81818 4.94394 5.07305 5.30333 5.32261 5.54208 5.56562 5.65736 5.77427 5.78522 5.98022 5.99031 6.48839 6.71212 6.91904 7.06996 7.63527 7.75441 8.05546 8.47083 8.52468 8.79566 8.89558 9.53460 10.93454 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.007294 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.584404 B = 3838.045121 C = 4451.362101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.591 4.591 8 H 0.070 0.930 9 C 0.002 3.998 10 C 0.534 3.466 11 O -0.520 6.520 12 N -0.601 5.601 13 C 0.097 3.903 14 C -0.104 4.104 15 C -0.159 4.159 16 H 0.122 0.878 17 C -0.126 4.126 18 C 0.051 3.949 19 C 0.576 3.424 20 N -0.818 5.818 21 O -0.555 6.555 22 H 0.266 0.734 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.402 0.598 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -13.717 3.499 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.904 3.096 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.629 4.629 8 H 0.088 0.912 9 C -0.037 4.037 10 C 0.326 3.674 11 O -0.394 6.394 12 N -0.339 5.339 13 C -0.025 4.025 14 C -0.142 4.142 15 C -0.179 4.179 16 H 0.140 0.860 17 C -0.165 4.165 18 C -0.039 4.039 19 C 0.359 3.641 20 N -0.378 5.378 21 O -0.433 6.433 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.231 0.769 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.074 -12.197 2.984 12.556 hybrid contribution 0.101 -1.395 0.271 1.425 sum 0.026 -13.592 3.255 13.976 Atomic orbital electron populations 1.70815 1.06859 1.30297 1.46949 1.25910 0.96415 1.02845 0.93540 0.83424 0.74750 0.74550 0.76850 1.21362 1.21280 1.20977 1.21987 0.95667 0.89960 1.55319 0.91160 1.19334 0.94559 0.91552 0.98247 1.21708 0.91132 0.81205 0.73334 1.90611 1.17383 1.83126 1.48230 1.48827 1.06542 1.03321 1.75182 1.22590 0.83383 0.96904 0.99673 1.22361 0.95883 0.95981 1.00023 1.23796 0.97703 0.99789 0.96631 0.86023 1.23297 1.02665 0.97755 0.92769 1.21438 0.89898 0.84238 1.08327 1.18764 0.87632 0.78240 0.79439 1.43508 1.11624 1.49345 1.33374 1.90689 1.56245 1.47594 1.48785 0.92419 0.94421 0.94364 0.88875 0.90844 0.89578 0.89783 0.87782 0.86471 0.76904 0.76985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.77 13.65 55.43 0.76 -26.02 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.08 25.46 29.90 -169.99 -5.08 20.37 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.59 -16.78 8.92 -34.44 -0.31 -17.09 16 8 H 0.07 2.10 6.75 -52.49 -0.35 1.75 16 9 C 0.00 0.05 3.79 -29.04 -0.11 -0.06 16 10 C 0.53 11.76 7.42 -10.99 -0.08 11.68 16 11 O -0.52 -12.77 12.13 5.56 0.07 -12.70 16 12 N -0.60 -10.36 3.27 -156.40 -0.51 -10.87 16 13 C 0.10 1.26 6.45 -2.03 -0.01 1.25 16 14 C -0.10 -1.04 7.04 -24.71 -0.17 -1.21 16 15 C -0.16 -1.82 7.04 -89.14 -0.63 -2.45 16 16 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.13 -1.60 9.44 -26.74 -0.25 -1.85 16 18 C 0.05 0.82 3.28 -132.04 -0.43 0.38 16 19 C 0.58 10.51 6.82 -10.98 -0.07 10.43 16 20 N -0.82 -13.34 6.93 31.22 0.22 -13.12 16 21 O -0.56 -11.54 17.43 5.56 0.10 -11.44 16 22 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 23 H 0.04 0.90 7.65 -51.93 -0.40 0.50 16 24 H 0.04 0.95 8.01 -51.92 -0.42 0.53 16 25 H 0.09 1.21 7.22 -51.93 -0.37 0.83 16 26 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.18 7.16 -51.93 -0.37 0.81 16 30 H 0.12 1.47 7.93 -51.93 -0.41 1.06 16 31 H 0.40 6.38 7.70 -40.82 -0.31 6.07 16 32 H 0.40 5.92 8.93 -40.82 -0.36 5.56 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -34.25 270.57 -6.29 -40.54 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.74 Total: 7.72 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.17 Total: 1.44 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.46 Total: -50.01 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.25 -6.29 -40.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.132 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds