Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48501 * 109.46994 * 90.00557 * 3 2 1 5 5 H 1.48505 * 109.47526 * 209.99961 * 3 2 1 6 6 H 1.48496 * 109.47374 * 330.00579 * 3 2 1 7 7 C 1.37882 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47408 * 180.02562 * 9 7 2 11 11 O 1.21277 * 119.99866 * 0.02562 * 10 9 7 12 12 N 1.34769 * 120.00253 * 179.97438 * 10 9 7 13 13 C 1.48104 * 126.94636 * 355.29719 * 12 10 9 14 14 C 1.55128 * 103.17630 * 219.43327 * 13 12 10 15 15 C 1.54710 * 102.53102 * 321.99901 * 14 13 12 16 16 H 1.09000 * 117.82315 * 163.10244 * 15 14 13 17 17 C 1.53121 * 118.02511 * 319.69934 * 15 14 13 18 18 C 1.47381 * 126.94895 * 175.60892 * 12 10 9 19 19 C 1.50703 * 117.17963 * 15.70651 * 18 12 10 20 20 N 1.34776 * 119.99780 * 40.48764 * 19 18 12 21 21 O 1.21278 * 120.00067 * 220.48663 * 19 18 12 22 22 H 0.97004 * 119.99400 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47302 * 300.00713 * 9 7 2 24 24 H 1.09008 * 109.46643 * 60.00312 * 9 7 2 25 25 H 1.08997 * 110.65629 * 337.49167 * 13 12 10 26 26 H 1.09002 * 110.66176 * 100.60631 * 13 12 10 27 27 H 1.08997 * 110.33145 * 203.98746 * 14 13 12 28 28 H 1.08995 * 111.51622 * 80.55630 * 14 13 12 29 29 H 1.09004 * 117.45479 * 344.10561 * 17 15 14 30 30 H 1.08999 * 117.45444 * 199.33503 * 17 15 14 31 31 H 0.96995 * 119.99897 * 5.17537 * 20 19 18 32 32 H 0.97002 * 119.99712 * 185.17211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4228 -3.4230 -0.0001 12 7 1.7812 -4.9152 0.0000 13 6 0.3724 -5.3613 0.0976 14 6 0.4586 -6.6058 1.0198 15 6 1.7759 -7.2739 0.5597 16 1 2.2292 -8.0130 1.2202 17 6 2.0813 -7.3046 -0.9405 18 6 2.5932 -6.1419 -0.0901 19 6 4.0717 -6.0095 0.1697 20 7 4.5126 -5.2116 1.1624 21 8 4.8648 -6.6208 -0.5145 22 1 -0.4849 -0.8401 0.0004 23 1 0.6247 -2.5571 0.8896 24 1 0.6242 -2.5567 -0.8904 25 1 -0.2442 -4.5896 0.5584 26 1 -0.0153 -5.6290 -0.8853 27 1 -0.3910 -7.2660 0.8454 28 1 0.5159 -6.3215 2.0705 29 1 1.2577 -7.1020 -1.6252 30 1 2.8137 -8.0326 -1.2894 31 1 3.8783 -4.7817 1.7571 32 1 5.4643 -5.0672 1.2821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -61.362788 kcal Electronic energy + Delta-G solvation = -17366.447933 eV Core-core repulsion = 14520.044169 eV Total energy + Delta-G solvation = -2846.403764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.13336 -39.81658 -39.11137 -35.53173 -34.57925 -34.04470 -31.23110 -30.47419 -26.00619 -25.48237 -24.61473 -22.44808 -21.05270 -20.05448 -18.83464 -18.73170 -18.00065 -17.27150 -16.64367 -16.14188 -15.82529 -15.71167 -15.44376 -15.08026 -14.44727 -14.15634 -14.06894 -13.75772 -13.28606 -13.00311 -12.84331 -12.51549 -12.10433 -11.96596 -11.74206 -11.72905 -11.05482 -10.93302 -10.79218 -10.60449 -10.31864 -9.55024 -8.71775 -6.41842 1.16001 1.51636 1.59064 1.66955 1.79518 1.93922 2.46770 2.53556 2.66612 3.11710 3.31589 3.53762 3.83079 3.85655 4.04177 4.10513 4.35430 4.57348 4.65041 4.68311 4.79251 4.94829 4.98528 5.05911 5.14237 5.26725 5.74385 5.82260 6.20064 6.29667 6.39480 6.64177 7.16375 7.23292 7.36535 8.70522 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.007294 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.584404 B = 3838.045121 C = 4451.362101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.026 4.026 3 Si 1.117 2.883 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.611 4.611 8 H 0.048 0.952 9 C 0.007 3.993 10 C 0.532 3.468 11 O -0.558 6.558 12 N -0.594 5.594 13 C 0.085 3.915 14 C -0.092 4.092 15 C -0.117 4.117 16 H 0.143 0.857 17 C -0.116 4.116 18 C 0.002 3.998 19 C 0.565 3.435 20 N -0.811 5.811 21 O -0.592 6.592 22 H 0.261 0.739 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.404 0.596 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -15.094 4.097 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.939 3.061 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.649 4.649 8 H 0.066 0.934 9 C -0.032 4.032 10 C 0.323 3.677 11 O -0.436 6.436 12 N -0.329 5.329 13 C -0.036 4.036 14 C -0.130 4.130 15 C -0.137 4.137 16 H 0.161 0.839 17 C -0.154 4.154 18 C -0.087 4.087 19 C 0.349 3.651 20 N -0.370 5.370 21 O -0.473 6.473 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.233 0.767 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.381 -13.628 3.608 14.165 hybrid contribution 0.456 -1.057 0.087 1.154 sum -0.925 -14.685 3.695 15.171 Atomic orbital electron populations 1.70906 1.07372 1.30160 1.48256 1.27183 0.96620 1.06016 0.92647 0.82904 0.73820 0.71456 0.77929 1.19455 1.20973 1.20160 1.22226 0.94960 0.92220 1.55515 0.93415 1.19125 0.94651 0.91542 0.97901 1.21100 0.90013 0.82574 0.73982 1.90583 1.18353 1.84225 1.50405 1.48529 1.08791 1.02362 1.73255 1.22990 0.80764 0.98278 1.01600 1.22436 0.96321 0.94608 0.99588 1.24034 0.96751 0.96758 0.96128 0.83938 1.23436 1.02666 0.95214 0.94116 1.21656 0.88765 0.84754 1.13555 1.19283 0.88847 0.77854 0.79080 1.43491 1.11992 1.48552 1.32951 1.90653 1.57446 1.49219 1.49972 0.92919 0.94003 0.95053 0.89183 0.89141 0.85619 0.88918 0.86163 0.86435 0.76674 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.65 21.45 0.29 -54.34 16 2 C -0.03 -1.49 5.46 84.66 0.46 -1.03 16 3 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.61 -35.40 8.92 25.60 0.23 -35.17 16 8 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 9 C 0.01 0.35 3.79 29.10 0.11 0.46 16 10 C 0.53 23.69 7.42 87.66 0.65 24.34 16 11 O -0.56 -28.16 12.13 -3.02 -0.04 -28.20 16 12 N -0.59 -19.79 3.27 -767.12 -2.51 -22.30 16 13 C 0.08 1.96 6.45 86.80 0.56 2.52 16 14 C -0.09 -1.40 7.04 31.91 0.22 -1.18 16 15 C -0.12 -2.21 7.04 -9.83 -0.07 -2.28 16 16 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.12 -2.59 9.44 30.59 0.29 -2.30 16 18 C 0.00 0.06 3.28 2.98 0.01 0.07 16 19 C 0.56 20.54 6.82 87.66 0.60 21.14 16 20 N -0.81 -26.75 6.93 -173.53 -1.20 -27.95 16 21 O -0.59 -24.83 17.43 -3.02 -0.05 -24.88 16 22 H 0.26 15.01 7.22 -92.71 -0.67 14.34 16 23 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 24 H 0.03 1.58 8.01 -2.38 -0.02 1.56 16 25 H 0.09 2.15 7.22 -2.39 -0.02 2.13 16 26 H 0.09 1.81 7.30 -2.39 -0.02 1.79 16 27 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 2.30 7.16 -2.38 -0.02 2.28 16 30 H 0.12 2.67 7.93 -2.39 -0.02 2.65 16 31 H 0.40 12.95 7.70 -92.71 -0.71 12.24 16 32 H 0.40 12.28 8.93 -92.71 -0.83 11.45 16 Total: -1.00 -75.65 270.57 1.33 -74.32 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.28 Total: 23.53 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 3.06 Total: 6.57 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.42 Total: -104.59 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -75.65 1.33 -74.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.958 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds